miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10319 3' -54.3 NC_002687.1 + 332882 0.66 0.99512
Target:  5'- --cGCCAGGgUGUGCuGCAgCCGcaaaGGg -3'
miRNA:   3'- agaCGGUCCaACAUGuCGU-GGCug--CC- -5'
10319 3' -54.3 NC_002687.1 + 121713 0.66 0.99512
Target:  5'- --aGCCGaGagGUACGGCuuCGACGGg -3'
miRNA:   3'- agaCGGUcCaaCAUGUCGugGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 257374 0.66 0.993569
Target:  5'- cUCggGCCAGuGUguaucggaggUGUGCAGCAUCGccGCGa -3'
miRNA:   3'- -AGa-CGGUC-CA----------ACAUGUCGUGGC--UGCc -5'
10319 3' -54.3 NC_002687.1 + 61469 0.66 0.993569
Target:  5'- cUCUGCaAGGUgauuCAGaauuCCGACGGg -3'
miRNA:   3'- -AGACGgUCCAacauGUCgu--GGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 242558 0.66 0.992657
Target:  5'- aUUUGUuccgCAGGUUGUcUAGCACUGGCu- -3'
miRNA:   3'- -AGACG----GUCCAACAuGUCGUGGCUGcc -5'
10319 3' -54.3 NC_002687.1 + 231692 0.66 0.991645
Target:  5'- cUCUGgaaauUCAuGGUgGUGgggaGGCACCGACGGg -3'
miRNA:   3'- -AGAC-----GGU-CCAaCAUg---UCGUGGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 277131 0.66 0.991645
Target:  5'- --aGCCGGGUcGUccgAUGGcCGCCGACGa -3'
miRNA:   3'- agaCGGUCCAaCA---UGUC-GUGGCUGCc -5'
10319 3' -54.3 NC_002687.1 + 259812 0.66 0.991645
Target:  5'- --gGCCaAGGcgg-GCAGCGCCGACa- -3'
miRNA:   3'- agaCGG-UCCaacaUGUCGUGGCUGcc -5'
10319 3' -54.3 NC_002687.1 + 159885 0.66 0.991645
Target:  5'- --cGCCAGGc---GCAGcCACuCGGCGGg -3'
miRNA:   3'- agaCGGUCCaacaUGUC-GUG-GCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 204716 0.67 0.990987
Target:  5'- aCUgGCCAGGUUu--CAGCACCGcuguuugccgauuuCGGg -3'
miRNA:   3'- aGA-CGGUCCAAcauGUCGUGGCu-------------GCC- -5'
10319 3' -54.3 NC_002687.1 + 296730 0.67 0.987938
Target:  5'- cCUGCaAGGcgcgGUGCacgccuuucAGCACCGACGa -3'
miRNA:   3'- aGACGgUCCaa--CAUG---------UCGUGGCUGCc -5'
10319 3' -54.3 NC_002687.1 + 311063 0.67 0.986454
Target:  5'- -aUGUUuuGUUGUACAGCACUGAaauCGGc -3'
miRNA:   3'- agACGGucCAACAUGUCGUGGCU---GCC- -5'
10319 3' -54.3 NC_002687.1 + 258231 0.67 0.984833
Target:  5'- -gUGCCGGG-UGUucuucggaaAGCACCGugGa -3'
miRNA:   3'- agACGGUCCaACAug-------UCGUGGCugCc -5'
10319 3' -54.3 NC_002687.1 + 250359 0.67 0.984833
Target:  5'- --cGCCu-GUUGUACAGCacgGCCGugGa -3'
miRNA:   3'- agaCGGucCAACAUGUCG---UGGCugCc -5'
10319 3' -54.3 NC_002687.1 + 274859 0.67 0.984833
Target:  5'- aCUGCaaccgcaauGGacucucccuUUGUGCAGCACCcACGGg -3'
miRNA:   3'- aGACGgu-------CC---------AACAUGUCGUGGcUGCC- -5'
10319 3' -54.3 NC_002687.1 + 249813 0.67 0.984833
Target:  5'- cUUGCCAGGUUGcagACGGCAaucuccuccuUgGACGa -3'
miRNA:   3'- aGACGGUCCAACa--UGUCGU----------GgCUGCc -5'
10319 3' -54.3 NC_002687.1 + 98176 0.67 0.983069
Target:  5'- -gUGCCAGcagUGccaGCGGUGCCGAUGGu -3'
miRNA:   3'- agACGGUCca-ACa--UGUCGUGGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 97633 0.67 0.983069
Target:  5'- -gUGCCGGcaccgUGUcgGCGGUgacACCGACGGg -3'
miRNA:   3'- agACGGUCca---ACA--UGUCG---UGGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 85886 0.68 0.981155
Target:  5'- --gGCCAcguGGUccUGCcGCGCCGGCGGg -3'
miRNA:   3'- agaCGGU---CCAacAUGuCGUGGCUGCC- -5'
10319 3' -54.3 NC_002687.1 + 280962 0.68 0.979082
Target:  5'- --gGCCuGGGUg--GCGGCAgCGGCGGc -3'
miRNA:   3'- agaCGG-UCCAacaUGUCGUgGCUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.