miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10322 3' -56.3 NC_002687.1 + 27560 0.66 0.979699
Target:  5'- cUCGcgCCGCUCAGCGaCCgugucgggGGCGACGa -3'
miRNA:   3'- uGGCuaGGUGGGUUGC-GG--------UCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 259540 0.66 0.979699
Target:  5'- -aCGAUCguguuGCgCGGCGCCGGCAACu- -3'
miRNA:   3'- ugGCUAGg----UGgGUUGCGGUCGUUGca -5'
10322 3' -56.3 NC_002687.1 + 114592 0.66 0.977524
Target:  5'- uACCGAcgCugUCAGCGCCAGUGAUc- -3'
miRNA:   3'- -UGGCUagGugGGUUGCGGUCGUUGca -5'
10322 3' -56.3 NC_002687.1 + 9125 0.66 0.977524
Target:  5'- cCCGA-CCACgCAACGCCGuCAGCc- -3'
miRNA:   3'- uGGCUaGGUGgGUUGCGGUcGUUGca -5'
10322 3' -56.3 NC_002687.1 + 63983 0.66 0.977524
Target:  5'- cACCGAUCCACauguCGACGUaCGGCu-CGa -3'
miRNA:   3'- -UGGCUAGGUGg---GUUGCG-GUCGuuGCa -5'
10322 3' -56.3 NC_002687.1 + 98148 0.66 0.972666
Target:  5'- uGCCGGUggugCCAgcggugCCAGCgguGCCAGCAACGa -3'
miRNA:   3'- -UGGCUA----GGUg-----GGUUG---CGGUCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 269759 0.66 0.972666
Target:  5'- uCCGA-CCugCCuucACGCCAGUcACGc -3'
miRNA:   3'- uGGCUaGGugGGu--UGCGGUCGuUGCa -5'
10322 3' -56.3 NC_002687.1 + 307670 0.66 0.972666
Target:  5'- gACCuGAUacaaCACCCAugGgaUCGGCGGCGg -3'
miRNA:   3'- -UGG-CUAg---GUGGGUugC--GGUCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 275631 0.66 0.972666
Target:  5'- -gCGAUCCACgUCGGCGCCuGCGuACa- -3'
miRNA:   3'- ugGCUAGGUG-GGUUGCGGuCGU-UGca -5'
10322 3' -56.3 NC_002687.1 + 30720 0.66 0.969971
Target:  5'- uACauAUCUACCCGuACGCCAacuGCGACGc -3'
miRNA:   3'- -UGgcUAGGUGGGU-UGCGGU---CGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 161851 0.66 0.968842
Target:  5'- -aUGAUCCACCUuuuccgucacguCGCgCAGCAACGc -3'
miRNA:   3'- ugGCUAGGUGGGuu----------GCG-GUCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 226792 0.67 0.960758
Target:  5'- uGCCGGUgCCGgugCCggUGCCGGUGGCGg -3'
miRNA:   3'- -UGGCUA-GGUg--GGuuGCGGUCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 225212 0.67 0.960758
Target:  5'- uGCCGGcgCCGCC--GCGUCGGCGGCu- -3'
miRNA:   3'- -UGGCUa-GGUGGguUGCGGUCGUUGca -5'
10322 3' -56.3 NC_002687.1 + 145843 0.67 0.960758
Target:  5'- uGCCGAUCUGCUCGccgaggcgcGCGCCGG-GGCGc -3'
miRNA:   3'- -UGGCUAGGUGGGU---------UGCGGUCgUUGCa -5'
10322 3' -56.3 NC_002687.1 + 231948 0.67 0.960758
Target:  5'- aGCCGcugCCACCUacGACGCCAaGCA-CGc -3'
miRNA:   3'- -UGGCua-GGUGGG--UUGCGGU-CGUuGCa -5'
10322 3' -56.3 NC_002687.1 + 308413 0.67 0.957294
Target:  5'- uACCag-CCACCCGGCGaccCCGGCGggGCGg -3'
miRNA:   3'- -UGGcuaGGUGGGUUGC---GGUCGU--UGCa -5'
10322 3' -56.3 NC_002687.1 + 135826 0.67 0.955119
Target:  5'- cACCGAUCaCggguguguggacaacGCCgggaauCAugGCCGGCAACGa -3'
miRNA:   3'- -UGGCUAG-G---------------UGG------GUugCGGUCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 84903 0.67 0.953628
Target:  5'- cACCGA-CgGCacgaCGAUGCCGGUGACGUc -3'
miRNA:   3'- -UGGCUaGgUGg---GUUGCGGUCGUUGCA- -5'
10322 3' -56.3 NC_002687.1 + 136723 0.68 0.945672
Target:  5'- aACgGAUCUuuCCCGGCGCCuGUGACa- -3'
miRNA:   3'- -UGgCUAGGu-GGGUUGCGGuCGUUGca -5'
10322 3' -56.3 NC_002687.1 + 36202 0.68 0.945672
Target:  5'- gGCCucgCCACCCGugGgCAGUGugGUu -3'
miRNA:   3'- -UGGcuaGGUGGGUugCgGUCGUugCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.