Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10342 | 3' | -55 | NC_002687.1 | + | 171724 | 0.65 | 0.993167 |
Target: 5'- uGGAG-ACCuUGGAGCUGGACG-ACg- -3' miRNA: 3'- uCCUCaUGG-GCCUUGAUCUGCgUGgg -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 243110 | 0.66 | 0.992218 |
Target: 5'- cAGGAGUaauGCCCGcGAGCau--CGguCCCu -3' miRNA: 3'- -UCCUCA---UGGGC-CUUGaucuGCguGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 215924 | 0.66 | 0.991167 |
Target: 5'- uAGGAa----CGGAugUGGugGCACCg -3' miRNA: 3'- -UCCUcauggGCCUugAUCugCGUGGg -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 211352 | 0.66 | 0.990007 |
Target: 5'- cGGAGagcgcggcUGCCCGGAcucgacuggcgACUAcGACGUcgugcuuccggaACCCg -3' miRNA: 3'- uCCUC--------AUGGGCCU-----------UGAU-CUGCG------------UGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 262382 | 0.66 | 0.988732 |
Target: 5'- -cGAGUACgCGacGAACggcGGACGCuACCCu -3' miRNA: 3'- ucCUCAUGgGC--CUUGa--UCUGCG-UGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 180047 | 0.66 | 0.988732 |
Target: 5'- gAGGAc-GCCgGGggUggguuUGGACGUACCUg -3' miRNA: 3'- -UCCUcaUGGgCCuuG-----AUCUGCGUGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 134047 | 0.66 | 0.988732 |
Target: 5'- aAGGAGUuaCCGGAAaaaccGCGCGCUCu -3' miRNA: 3'- -UCCUCAugGGCCUUgauc-UGCGUGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 226150 | 0.67 | 0.985804 |
Target: 5'- uGGAGUAUCguggGGAGgaGGAUGCACUa -3' miRNA: 3'- uCCUCAUGGg---CCUUgaUCUGCGUGGg -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 308424 | 0.67 | 0.985804 |
Target: 5'- cGGcg-ACCCcggcGGGGC-GGGCGCGCCCc -3' miRNA: 3'- uCCucaUGGG----CCUUGaUCUGCGUGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 110672 | 0.67 | 0.985644 |
Target: 5'- uGGGAGaACCUGGuuucgagGACcAG-UGCGCCCg -3' miRNA: 3'- -UCCUCaUGGGCC-------UUGaUCuGCGUGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 8271 | 0.67 | 0.982327 |
Target: 5'- uGGAGUACCUauGGcgcAGCUgucGGAUGCugCUg -3' miRNA: 3'- uCCUCAUGGG--CC---UUGA---UCUGCGugGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 244127 | 0.67 | 0.978245 |
Target: 5'- aAGGuGGUGCCCGGGcaaACUucguaguugGGACGCuuacgGCCg -3' miRNA: 3'- -UCC-UCAUGGGCCU---UGA---------UCUGCG-----UGGg -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 151781 | 0.68 | 0.975961 |
Target: 5'- uGGGAgacuuGUGCUCGGGGCUuucGACaggGCACCg -3' miRNA: 3'- -UCCU-----CAUGGGCCUUGAu--CUG---CGUGGg -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 330779 | 0.68 | 0.970874 |
Target: 5'- gGGGAGaAUCgGGGACcGGACGCGgCa -3' miRNA: 3'- -UCCUCaUGGgCCUUGaUCUGCGUgGg -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 290970 | 0.68 | 0.970601 |
Target: 5'- cGGGGUcUCCGGAucACUuaugacaAGGCGCGCgCa -3' miRNA: 3'- uCCUCAuGGGCCU--UGA-------UCUGCGUGgG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 11175 | 0.68 | 0.96835 |
Target: 5'- cGGGGGUGCaaauguggcaCCGGGACgggcgagccaaggagGuuuuggccaaGACGCACCCg -3' miRNA: 3'- -UCCUCAUG----------GGCCUUGa--------------U----------CUGCGUGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 204395 | 0.68 | 0.96806 |
Target: 5'- uGGGuGUAgUCGGAAUacgAGGCGUuCCCa -3' miRNA: 3'- -UCCuCAUgGGCCUUGa--UCUGCGuGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 58168 | 0.68 | 0.961863 |
Target: 5'- aAGGAgcaaccGUugCCGGGGC-AGAUGCaaaccACCCu -3' miRNA: 3'- -UCCU------CAugGGCCUUGaUCUGCG-----UGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 39258 | 0.68 | 0.961863 |
Target: 5'- aGGaGAGUAUCCGGcauCgauuCGCGCCCa -3' miRNA: 3'- -UC-CUCAUGGGCCuu-GaucuGCGUGGG- -5' |
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10342 | 3' | -55 | NC_002687.1 | + | 264676 | 0.7 | 0.938427 |
Target: 5'- gAGGGGUGCCucguuucuaCGGAGCUguugacaaAGACGUcgGCCa -3' miRNA: 3'- -UCCUCAUGG---------GCCUUGA--------UCUGCG--UGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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