Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10349 | 5' | -53.8 | NC_002687.1 | + | 307814 | 0.69 | 0.961907 |
Target: 5'- cUG-AUGggGACGG-CGGUGACG-GCg -3' miRNA: 3'- uACgUGCuuCUGCCaGCUACUGCgCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 118269 | 0.67 | 0.990226 |
Target: 5'- -gGUAgGAAGACGa-CGGUGcCGCGCc -3' miRNA: 3'- uaCGUgCUUCUGCcaGCUACuGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 73340 | 0.67 | 0.990226 |
Target: 5'- uAUGCucCGGAGACGGU-GAcGGCGacaGCa -3' miRNA: 3'- -UACGu-GCUUCUGCCAgCUaCUGCg--CG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 139769 | 0.67 | 0.988955 |
Target: 5'- aAUGCgGCGAgguauacccacAGugGGUCGAUcGACGUa- -3' miRNA: 3'- -UACG-UGCU-----------UCugCCAGCUA-CUGCGcg -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 214997 | 0.67 | 0.988955 |
Target: 5'- --aCACGGagAGACGuGUCucgcuGAUGugGCGCu -3' miRNA: 3'- uacGUGCU--UCUGC-CAG-----CUACugCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 118185 | 0.68 | 0.98603 |
Target: 5'- cUGCgucgaACGAGGACGa-CGGUGcCGCGCc -3' miRNA: 3'- uACG-----UGCUUCUGCcaGCUACuGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 232352 | 0.68 | 0.98603 |
Target: 5'- cAUGCACGAGGcuucaCGcgGAUGCGCg -3' miRNA: 3'- -UACGUGCUUCugccaGCuaCUGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 153467 | 0.68 | 0.982546 |
Target: 5'- uUGaACG-AGACGGcgCGGagUGGCGCGCu -3' miRNA: 3'- uACgUGCuUCUGCCa-GCU--ACUGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 76958 | 0.68 | 0.980576 |
Target: 5'- -aGCACGAGGcACGG-C-AUGuACGUGCg -3' miRNA: 3'- uaCGUGCUUC-UGCCaGcUAC-UGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 333702 | 0.67 | 0.991809 |
Target: 5'- -cGCACGGAGgccACGugccauauucuugguGUCGA-GGCGCGUa -3' miRNA: 3'- uaCGUGCUUC---UGC---------------CAGCUaCUGCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 184823 | 0.67 | 0.992422 |
Target: 5'- -gGCAUGGAGAUGGUa-GUG-CGCGa -3' miRNA: 3'- uaCGUGCUUCUGCCAgcUACuGCGCg -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 244053 | 0.66 | 0.993363 |
Target: 5'- cUGUGCGAGGuCGGU-GGUGcCGCGa -3' miRNA: 3'- uACGUGCUUCuGCCAgCUACuGCGCg -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 78418 | 0.66 | 0.996235 |
Target: 5'- -aGCAcCGAGGcCGGUCacggguuUGAgGCGCu -3' miRNA: 3'- uaCGU-GCUUCuGCCAGcu-----ACUgCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 103294 | 0.66 | 0.996178 |
Target: 5'- -aGgACGAGGACcuGGUCGcgGACGaauccuuCGCc -3' miRNA: 3'- uaCgUGCUUCUG--CCAGCuaCUGC-------GCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 115951 | 0.66 | 0.995636 |
Target: 5'- uUGCGgGAAGACGGUCuGUGuugauaucuUGUGUa -3' miRNA: 3'- uACGUgCUUCUGCCAGcUACu--------GCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 146213 | 0.66 | 0.995636 |
Target: 5'- cUGCACGGAGGCGaaCGccUGGCGCu- -3' miRNA: 3'- uACGUGCUUCUGCcaGCu-ACUGCGcg -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 151378 | 0.66 | 0.994207 |
Target: 5'- -cGCAUGGAaaACGGUCGAUGgACGUu- -3' miRNA: 3'- uaCGUGCUUc-UGCCAGCUAC-UGCGcg -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 308631 | 0.66 | 0.994207 |
Target: 5'- -cGCGCGGAGAgaccUGGUCugggguGGUGAgGgGCg -3' miRNA: 3'- uaCGUGCUUCU----GCCAG------CUACUgCgCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 301006 | 0.66 | 0.993963 |
Target: 5'- -gGCGuCGGauAGGCGGUCGAacgguaccccgcugUGGuuuCGCGCa -3' miRNA: 3'- uaCGU-GCU--UCUGCCAGCU--------------ACU---GCGCG- -5' |
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10349 | 5' | -53.8 | NC_002687.1 | + | 168800 | 0.66 | 0.993363 |
Target: 5'- uUGCAUuu-GAUGGUCGc--GCGCGCa -3' miRNA: 3'- uACGUGcuuCUGCCAGCuacUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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