miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10353 5' -55.5 NC_002687.1 + 225212 0.66 0.97479
Target:  5'- uGCCGGCGccGCC-GCGucGgCGGCu- -3'
miRNA:   3'- -CGGCCGUuuCGGuCGUuuCgGUCGuu -5'
10353 5' -55.5 NC_002687.1 + 224458 0.66 0.97479
Target:  5'- cGgCGGCAgcGgCAGCGGcagcuucguGGCCAGCu- -3'
miRNA:   3'- -CgGCCGUuuCgGUCGUU---------UCGGUCGuu -5'
10353 5' -55.5 NC_002687.1 + 260230 0.66 0.97479
Target:  5'- -gCGGCcAAGCCAuGCAAgaaagcuuucaGGCCGGUg- -3'
miRNA:   3'- cgGCCGuUUCGGU-CGUU-----------UCGGUCGuu -5'
10353 5' -55.5 NC_002687.1 + 308470 0.66 0.97479
Target:  5'- aCCGGaGAAGCUgGGCAGAGCUAcGCGg -3'
miRNA:   3'- cGGCCgUUUCGG-UCGUUUCGGU-CGUu -5'
10353 5' -55.5 NC_002687.1 + 308772 0.66 0.97479
Target:  5'- cGCCGGgGucGCCGGguG-GCUGGUAGg -3'
miRNA:   3'- -CGGCCgUuuCGGUCguUuCGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 154123 0.66 0.972161
Target:  5'- uGCCGaugucGCAGuugccaauAGCCAGCcGAGUCAGUg- -3'
miRNA:   3'- -CGGC-----CGUU--------UCGGUCGuUUCGGUCGuu -5'
10353 5' -55.5 NC_002687.1 + 179398 0.66 0.972161
Target:  5'- gGCCGGCAAaguAGCCccuGUugcAGCCAGa-- -3'
miRNA:   3'- -CGGCCGUU---UCGGu--CGuu-UCGGUCguu -5'
10353 5' -55.5 NC_002687.1 + 329790 0.66 0.972161
Target:  5'- uGCCcgguGGCGuGGCCGGaggaGAGGCC-GCAGg -3'
miRNA:   3'- -CGG----CCGUuUCGGUCg---UUUCGGuCGUU- -5'
10353 5' -55.5 NC_002687.1 + 242430 0.66 0.969339
Target:  5'- -gCGGCAAAaucGCCAGCA-GGCUugacgGGCGAu -3'
miRNA:   3'- cgGCCGUUU---CGGUCGUuUCGG-----UCGUU- -5'
10353 5' -55.5 NC_002687.1 + 248753 0.66 0.969047
Target:  5'- -aCGGCGAuccucccGGCCAGCAGcgaguagucggGGUguGCAAu -3'
miRNA:   3'- cgGCCGUU-------UCGGUCGUU-----------UCGguCGUU- -5'
10353 5' -55.5 NC_002687.1 + 21436 0.66 0.968455
Target:  5'- uGgCGGUgaugAAGGCCauucucgacagcggAGCAGAGCCAGaCGAa -3'
miRNA:   3'- -CgGCCG----UUUCGG--------------UCGUUUCGGUC-GUU- -5'
10353 5' -55.5 NC_002687.1 + 166278 0.66 0.96632
Target:  5'- uGCCGaG-AGGGUgAGCAcGGCCGGCGc -3'
miRNA:   3'- -CGGC-CgUUUCGgUCGUuUCGGUCGUu -5'
10353 5' -55.5 NC_002687.1 + 157204 0.66 0.963097
Target:  5'- aGCUGGUucAGCCAGUAGuccGCCA-CAAa -3'
miRNA:   3'- -CGGCCGuuUCGGUCGUUu--CGGUcGUU- -5'
10353 5' -55.5 NC_002687.1 + 303940 0.66 0.963097
Target:  5'- aGCCG---AAGCUAGCGucGCCAGUGGa -3'
miRNA:   3'- -CGGCcguUUCGGUCGUuuCGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 96344 0.66 0.963097
Target:  5'- cGCCGGCA---UgAGCAAGGaCAGCAc -3'
miRNA:   3'- -CGGCCGUuucGgUCGUUUCgGUCGUu -5'
10353 5' -55.5 NC_002687.1 + 227295 0.67 0.959665
Target:  5'- aGCCGaCGGAGCCgacggGGCGAcGCCcGCGAa -3'
miRNA:   3'- -CGGCcGUUUCGG-----UCGUUuCGGuCGUU- -5'
10353 5' -55.5 NC_002687.1 + 214987 0.67 0.959665
Target:  5'- aCCGGCGGGGCCG---AGGgCGGCGAc -3'
miRNA:   3'- cGGCCGUUUCGGUcguUUCgGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 146094 0.67 0.95602
Target:  5'- uGUCGGC--GGCCAGCGc--CCAGUAGu -3'
miRNA:   3'- -CGGCCGuuUCGGUCGUuucGGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 13011 0.67 0.952157
Target:  5'- aGCaCGGCAgcagaGAGCUGGUgAAAGgCAGCAGg -3'
miRNA:   3'- -CG-GCCGU-----UUCGGUCG-UUUCgGUCGUU- -5'
10353 5' -55.5 NC_002687.1 + 244045 0.67 0.952157
Target:  5'- gGUCGGUGGuGCC-GCGAGGCUGGUAGu -3'
miRNA:   3'- -CGGCCGUUuCGGuCGUUUCGGUCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.