miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10358 3' -56.1 NC_002687.1 + 117929 0.66 0.982923
Target:  5'- gGC--GUCGCCAUCGCCGgugCUCCg- -3'
miRNA:   3'- -CGguUAGCGGUGGUGGCauaGGGGag -5'
10358 3' -56.1 NC_002687.1 + 323391 0.66 0.982923
Target:  5'- -aCAAucUCGCCACCACCcu-UCCUC-Ca -3'
miRNA:   3'- cgGUU--AGCGGUGGUGGcauAGGGGaG- -5'
10358 3' -56.1 NC_002687.1 + 212142 0.66 0.982923
Target:  5'- aGCCAcUCGCCcacGCCACUGgcaCUCCa- -3'
miRNA:   3'- -CGGUuAGCGG---UGGUGGCauaGGGGag -5'
10358 3' -56.1 NC_002687.1 + 40525 0.66 0.982923
Target:  5'- aGCCAcGUCGCCAcgccucCCACCacgaUGUCuUCCUCc -3'
miRNA:   3'- -CGGU-UAGCGGU------GGUGGc---AUAG-GGGAG- -5'
10358 3' -56.1 NC_002687.1 + 281318 0.66 0.981013
Target:  5'- cGCCGc-UGCCGCCACCcaggCCCC-Cg -3'
miRNA:   3'- -CGGUuaGCGGUGGUGGcauaGGGGaG- -5'
10358 3' -56.1 NC_002687.1 + 75406 0.66 0.981013
Target:  5'- uGCUggUCuCCACUACCGUcgucgGUCUgugCCUCc -3'
miRNA:   3'- -CGGuuAGcGGUGGUGGCA-----UAGG---GGAG- -5'
10358 3' -56.1 NC_002687.1 + 312301 0.66 0.981013
Target:  5'- -aCAGUC-CCGCCGCCugacaGUCCCgUCa -3'
miRNA:   3'- cgGUUAGcGGUGGUGGca---UAGGGgAG- -5'
10358 3' -56.1 NC_002687.1 + 285203 0.66 0.981013
Target:  5'- aGCCAAUCcacCCGguCC-CCGggAUCCCCUUu -3'
miRNA:   3'- -CGGUUAGc--GGU--GGuGGCa-UAGGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 225446 0.66 0.981013
Target:  5'- gGUCGGUguugCGCCACCA-CGU-UCCUCUCc -3'
miRNA:   3'- -CGGUUA----GCGGUGGUgGCAuAGGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 234374 0.66 0.98041
Target:  5'- -gCGAUCGCCGCCAucuucuuggcagccUCGUGUCgCUUUu -3'
miRNA:   3'- cgGUUAGCGGUGGU--------------GGCAUAGgGGAG- -5'
10358 3' -56.1 NC_002687.1 + 224548 0.66 0.980206
Target:  5'- cGCCAc-CGCCACCGCCaccagcacugCCCC-Cg -3'
miRNA:   3'- -CGGUuaGCGGUGGUGGcaua------GGGGaG- -5'
10358 3' -56.1 NC_002687.1 + 318270 0.66 0.978948
Target:  5'- cGCUua-CGCCGCCACCGccuuUGUCaUCUCu -3'
miRNA:   3'- -CGGuuaGCGGUGGUGGC----AUAGgGGAG- -5'
10358 3' -56.1 NC_002687.1 + 283919 0.66 0.978948
Target:  5'- aGCCAGcaGCgGCgGCUGUAgauUCCCCUa -3'
miRNA:   3'- -CGGUUagCGgUGgUGGCAU---AGGGGAg -5'
10358 3' -56.1 NC_002687.1 + 217941 0.66 0.978948
Target:  5'- cGCCGccCGCCACC-CCGUugcgguacggAUCaCCCg- -3'
miRNA:   3'- -CGGUuaGCGGUGGuGGCA----------UAG-GGGag -5'
10358 3' -56.1 NC_002687.1 + 223958 0.66 0.978948
Target:  5'- gGUguGUUGCgGCCACCacc-CCCCUCc -3'
miRNA:   3'- -CGguUAGCGgUGGUGGcauaGGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 152953 0.66 0.978948
Target:  5'- aCCAAgauCCAUacaACCGaAUCCCCUCa -3'
miRNA:   3'- cGGUUagcGGUGg--UGGCaUAGGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 36967 0.66 0.978948
Target:  5'- aCCAAgauCCAUacaACCGaAUCCCCUCa -3'
miRNA:   3'- cGGUUagcGGUGg--UGGCaUAGGGGAG- -5'
10358 3' -56.1 NC_002687.1 + 224596 0.66 0.97672
Target:  5'- cGCC-AUCGCCAUCGCC--AUCgCCa- -3'
miRNA:   3'- -CGGuUAGCGGUGGUGGcaUAGgGGag -5'
10358 3' -56.1 NC_002687.1 + 331146 0.66 0.97672
Target:  5'- cCCAAcUGCCGCguCCG-GUCCCCg- -3'
miRNA:   3'- cGGUUaGCGGUGguGGCaUAGGGGag -5'
10358 3' -56.1 NC_002687.1 + 215640 0.66 0.97672
Target:  5'- aGCCuAUCGCCGUCGCCGagccUAUCgCCg- -3'
miRNA:   3'- -CGGuUAGCGGUGGUGGC----AUAGgGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.