miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10386 5' -54.9 NC_002687.1 + 332527 0.74 0.715938
Target:  5'- -cGGCUgcaGCACACCCUggcguucUUGUCCCCUUu -3'
miRNA:   3'- acUCGA---UGUGUGGGGa------AACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 308222 0.66 0.978285
Target:  5'- -aAGCaagaaUACACACCuCCUc-GUCCCCUg -3'
miRNA:   3'- acUCG-----AUGUGUGG-GGAaaCAGGGGAa -5'
10386 5' -54.9 NC_002687.1 + 297666 0.66 0.978285
Target:  5'- --uGCUcGCGCGCCUCUgcgUGUCCCg-- -3'
miRNA:   3'- acuCGA-UGUGUGGGGAa--ACAGGGgaa -5'
10386 5' -54.9 NC_002687.1 + 229645 1.06 0.010262
Target:  5'- gUGAGCUACACACCCCUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 229580 0.96 0.044859
Target:  5'- gUGAGCUACACACCUUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 229515 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 229450 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 229385 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 229320 0.94 0.058431
Target:  5'- gUGAGCUACGCACCUUUUUGUCCCCUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAa -5'
10386 5' -54.9 NC_002687.1 + 229256 0.96 0.044859
Target:  5'- gUGAGCUACACACCUUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 229191 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 229126 0.87 0.159307
Target:  5'- gUGAGCUACACACCCUUUcGUCCUCUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAaCAGGGGAa -5'
10386 5' -54.9 NC_002687.1 + 229062 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 228997 1.01 0.021236
Target:  5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 228932 0.86 0.189285
Target:  5'- gUGAGCUGCACACCUUUUUGUCCuCCg- -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGG-GGaa -5'
10386 5' -54.9 NC_002687.1 + 228868 1.06 0.010262
Target:  5'- gUGAGCUACACACCCCUUUGUCCCCUUa -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 228804 0.94 0.058431
Target:  5'- gUGAGCUACGCACCUUUUUGUCCCCUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAa -5'
10386 5' -54.9 NC_002687.1 + 228740 0.94 0.058431
Target:  5'- gUGAGCUGCACACCUCUaUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAaACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 228675 1 0.023642
Target:  5'- gUGAGCUACGCACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 228610 0.94 0.058431
Target:  5'- gUGAGCUGCACACCUCUaUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAaACAGGGGAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.