Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10386 | 5' | -54.9 | NC_002687.1 | + | 332527 | 0.74 | 0.715938 |
Target: 5'- -cGGCUgcaGCACACCCUggcguucUUGUCCCCUUu -3' miRNA: 3'- acUCGA---UGUGUGGGGa------AACAGGGGAA- -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 308222 | 0.66 | 0.978285 |
Target: 5'- -aAGCaagaaUACACACCuCCUc-GUCCCCUg -3' miRNA: 3'- acUCG-----AUGUGUGG-GGAaaCAGGGGAa -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 297666 | 0.66 | 0.978285 |
Target: 5'- --uGCUcGCGCGCCUCUgcgUGUCCCg-- -3' miRNA: 3'- acuCGA-UGUGUGGGGAa--ACAGGGgaa -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 229645 | 1.06 | 0.010262 |
Target: 5'- gUGAGCUACACACCCCUUUGUCCCCUUg -3' miRNA: 3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 229580 | 0.96 | 0.044859 |
Target: 5'- gUGAGCUACACACCUUUUUGUCCCCUUg -3' miRNA: 3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 229515 | 1.01 | 0.021236 |
Target: 5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3' miRNA: 3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 229450 | 1.01 | 0.021236 |
Target: 5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3' miRNA: 3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 229385 | 1.01 | 0.021236 |
Target: 5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3' miRNA: 3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 229320 | 0.94 | 0.058431 |
Target: 5'- gUGAGCUACGCACCUUUUUGUCCCCUg -3' miRNA: 3'- -ACUCGAUGUGUGGGGAAACAGGGGAa -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 229256 | 0.96 | 0.044859 |
Target: 5'- gUGAGCUACACACCUUUUUGUCCCCUUg -3' miRNA: 3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 229191 | 1.01 | 0.021236 |
Target: 5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3' miRNA: 3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 229126 | 0.87 | 0.159307 |
Target: 5'- gUGAGCUACACACCCUUUcGUCCUCUg -3' miRNA: 3'- -ACUCGAUGUGUGGGGAAaCAGGGGAa -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 229062 | 1.01 | 0.021236 |
Target: 5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3' miRNA: 3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 228997 | 1.01 | 0.021236 |
Target: 5'- gUGAGCUACACACCCUUUUGUCCCCUUg -3' miRNA: 3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 228932 | 0.86 | 0.189285 |
Target: 5'- gUGAGCUGCACACCUUUUUGUCCuCCg- -3' miRNA: 3'- -ACUCGAUGUGUGGGGAAACAGG-GGaa -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 228868 | 1.06 | 0.010262 |
Target: 5'- gUGAGCUACACACCCCUUUGUCCCCUUa -3' miRNA: 3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 228804 | 0.94 | 0.058431 |
Target: 5'- gUGAGCUACGCACCUUUUUGUCCCCUg -3' miRNA: 3'- -ACUCGAUGUGUGGGGAAACAGGGGAa -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 228740 | 0.94 | 0.058431 |
Target: 5'- gUGAGCUGCACACCUCUaUGUCCCCUUg -3' miRNA: 3'- -ACUCGAUGUGUGGGGAaACAGGGGAA- -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 228675 | 1 | 0.023642 |
Target: 5'- gUGAGCUACGCACCCUUUUGUCCCCUUg -3' miRNA: 3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5' |
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10386 | 5' | -54.9 | NC_002687.1 | + | 228610 | 0.94 | 0.058431 |
Target: 5'- gUGAGCUGCACACCUCUaUGUCCCCUUg -3' miRNA: 3'- -ACUCGAUGUGUGGGGAaACAGGGGAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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