miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10409 5' -57.4 NC_002687.1 + 301176 0.66 0.946862
Target:  5'- -gGUUGCCc-GGGGACGcaucuugacggGCCCAUCAAc -3'
miRNA:   3'- uaCGACGGcuUCCCUGU-----------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 227916 0.66 0.946862
Target:  5'- cGUGCUGUa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 228500 0.66 0.946862
Target:  5'- cGUGCUGUa-AGGGGACAaagggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 260899 0.66 0.942117
Target:  5'- -cGCUGCCGccgucaaGAGGGucccCAAUCCuCCAAa -3'
miRNA:   3'- uaCGACGGC-------UUCCCu---GUUGGGuGGUU- -5'
10409 5' -57.4 NC_002687.1 + 201459 0.66 0.933291
Target:  5'- uUGCUucGCCGGaguAGGGACaAAUCCACgAGu -3'
miRNA:   3'- uACGA--CGGCU---UCCCUG-UUGGGUGgUU- -5'
10409 5' -57.4 NC_002687.1 + 250045 0.66 0.928324
Target:  5'- -cGCUGCCuccucugacucGAAGGGGaauCCCAUCAc -3'
miRNA:   3'- uaCGACGG-----------CUUCCCUguuGGGUGGUu -5'
10409 5' -57.4 NC_002687.1 + 296948 0.67 0.912081
Target:  5'- cUGCUGCacCGggGGGugAGCUUGCuCGAc -3'
miRNA:   3'- uACGACG--GCuuCCCugUUGGGUG-GUU- -5'
10409 5' -57.4 NC_002687.1 + 270418 0.67 0.908593
Target:  5'- -gGCUGCgGAgGGGGACAaggagacugucugagAUCCACCu- -3'
miRNA:   3'- uaCGACGgCU-UCCCUGU---------------UGGGUGGuu -5'
10409 5' -57.4 NC_002687.1 + 8668 0.67 0.906224
Target:  5'- -gGUUGuCCGgcGGGAaaacgguGCCCGCCAGc -3'
miRNA:   3'- uaCGAC-GGCuuCCCUgu-----UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 52845 0.67 0.900146
Target:  5'- cGUGCUGCa-AGGGGACGaaagggugugcaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 260906 0.68 0.872998
Target:  5'- -gGCUGCCGAcaaacagAGGGACAagagACCCGa--- -3'
miRNA:   3'- uaCGACGGCU-------UCCCUGU----UGGGUgguu -5'
10409 5' -57.4 NC_002687.1 + 260689 0.68 0.872998
Target:  5'- uUGC-GCCGAGuGGACAAuccguauCCCACCAc -3'
miRNA:   3'- uACGaCGGCUUcCCUGUU-------GGGUGGUu -5'
10409 5' -57.4 NC_002687.1 + 55134 0.68 0.866575
Target:  5'- uGUGCUGCa-GGGGGACAaaagggugugcaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 42903 0.68 0.866575
Target:  5'- gAUGUUGCUaAGGGGACcccuGCCC-CCAAu -3'
miRNA:   3'- -UACGACGGcUUCCCUGu---UGGGuGGUU- -5'
10409 5' -57.4 NC_002687.1 + 52461 0.68 0.862204
Target:  5'- cGUGCUGCaagaggacaaaagggUGAGGGGACAacagugugcguaGCUCACUAAa -3'
miRNA:   3'- -UACGACG---------------GCUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 54004 0.68 0.859251
Target:  5'- uGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 51369 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 52780 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAg -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 51709 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaagcguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 51434 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.