miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10409 5' -57.4 NC_002687.1 + 301176 0.66 0.946862
Target:  5'- -gGUUGCCc-GGGGACGcaucuugacggGCCCAUCAAc -3'
miRNA:   3'- uaCGACGGcuUCCCUGU-----------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 296948 0.67 0.912081
Target:  5'- cUGCUGCacCGggGGGugAGCUUGCuCGAc -3'
miRNA:   3'- uACGACG--GCuuCCCugUUGGGUG-GUU- -5'
10409 5' -57.4 NC_002687.1 + 284649 0.73 0.612769
Target:  5'- gGUGCUGCCGGAaaaaaGACCCACCAAg -3'
miRNA:   3'- -UACGACGGCUUcccugUUGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 283514 1.04 0.007475
Target:  5'- gAUGCUGCCGAAGGGACAACCCACCAAg -3'
miRNA:   3'- -UACGACGGCUUCCCUGUUGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 270418 0.67 0.908593
Target:  5'- -gGCUGCgGAgGGGGACAaggagacugucugagAUCCACCu- -3'
miRNA:   3'- uaCGACGgCU-UCCCUGU---------------UGGGUGGuu -5'
10409 5' -57.4 NC_002687.1 + 260906 0.68 0.872998
Target:  5'- -gGCUGCCGAcaaacagAGGGACAagagACCCGa--- -3'
miRNA:   3'- uaCGACGGCU-------UCCCUGU----UGGGUgguu -5'
10409 5' -57.4 NC_002687.1 + 260899 0.66 0.942117
Target:  5'- -cGCUGCCGccgucaaGAGGGucccCAAUCCuCCAAa -3'
miRNA:   3'- uaCGACGGC-------UUCCCu---GUUGGGuGGUU- -5'
10409 5' -57.4 NC_002687.1 + 260689 0.68 0.872998
Target:  5'- uUGC-GCCGAGuGGACAAuccguauCCCACCAc -3'
miRNA:   3'- uACGaCGGCUUcCCUGUU-------GGGUGGUu -5'
10409 5' -57.4 NC_002687.1 + 257026 0.76 0.451552
Target:  5'- uUGCUGCCGAcGuGGugAuACCCGCCGAa -3'
miRNA:   3'- uACGACGGCUuC-CCugU-UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 250045 0.66 0.928324
Target:  5'- -cGCUGCCuccucugacucGAAGGGGaauCCCAUCAc -3'
miRNA:   3'- uaCGACGG-----------CUUCCCUguuGGGUGGUu -5'
10409 5' -57.4 NC_002687.1 + 229276 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaagggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 229211 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaagguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 229081 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 229016 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 228887 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaagguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 228693 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 228628 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaaggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 228500 0.66 0.946862
Target:  5'- cGUGCUGUa-AGGGGACAaagggguguguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 228371 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAuagaggugugcaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5'
10409 5' -57.4 NC_002687.1 + 228306 0.68 0.851736
Target:  5'- cGUGCUGCa-AGGGGACAaaagggugcguaGCUCACUAAa -3'
miRNA:   3'- -UACGACGgcUUCCCUGU------------UGGGUGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.