miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 3' -57.6 NC_002687.1 + 328761 0.66 0.941887
Target:  5'- uCGGUGGCcaagAGCAuCGGCgaAGCAGCuGGUg -3'
miRNA:   3'- uGUCAUCG----UCGUcGCCG--UCGUCG-UCG- -5'
10410 3' -57.6 NC_002687.1 + 225054 0.66 0.941887
Target:  5'- gACuGUGcCGGCAGCuGgGGCuGCAGCc -3'
miRNA:   3'- -UGuCAUcGUCGUCGcCgUCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 292338 0.66 0.937347
Target:  5'- aGCAGUAuGCAGUAGCcGUAGgguuCAGC-GCg -3'
miRNA:   3'- -UGUCAU-CGUCGUCGcCGUC----GUCGuCG- -5'
10410 3' -57.6 NC_002687.1 + 34631 0.66 0.937347
Target:  5'- aACuuGUGGUA-CAGCGGCGGU-GUGGCa -3'
miRNA:   3'- -UGu-CAUCGUcGUCGCCGUCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 254249 0.66 0.932098
Target:  5'- uGCGG-AGCGcugucaaccugcuGCAGaCGGUgucGCAGCAGCc -3'
miRNA:   3'- -UGUCaUCGU-------------CGUC-GCCGu--CGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 184066 0.66 0.927605
Target:  5'- gACAGacucCAGCuGCaGGCGGCGGUAGg -3'
miRNA:   3'- -UGUCauc-GUCGuCG-CCGUCGUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 17763 0.66 0.927605
Target:  5'- ----aAGCGuuGCAGCcGCAGCGGCuGCu -3'
miRNA:   3'- ugucaUCGU--CGUCGcCGUCGUCGuCG- -5'
10410 3' -57.6 NC_002687.1 + 298890 0.66 0.927605
Target:  5'- uCGGUGGCuGUGGCuGUGGUGGUGGCu -3'
miRNA:   3'- uGUCAUCGuCGUCGcCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 17430 0.66 0.927605
Target:  5'- ----aAGCGuuGCAGCcGCAGCGGCuGCu -3'
miRNA:   3'- ugucaUCGU--CGUCGcCGUCGUCGuCG- -5'
10410 3' -57.6 NC_002687.1 + 210598 0.66 0.927605
Target:  5'- aACAGUAuCAGCAGCGaCAauacGCGucuccGCAGCa -3'
miRNA:   3'- -UGUCAUcGUCGUCGCcGU----CGU-----CGUCG- -5'
10410 3' -57.6 NC_002687.1 + 224979 0.66 0.922401
Target:  5'- -gGGUGGUguuggGGaCAGCGGCGGUGG-AGCu -3'
miRNA:   3'- ugUCAUCG-----UC-GUCGCCGUCGUCgUCG- -5'
10410 3' -57.6 NC_002687.1 + 175128 0.66 0.922401
Target:  5'- cGCAGUuuucAGCGGUuccAGCGGUucCGGCGGUu -3'
miRNA:   3'- -UGUCA----UCGUCG---UCGCCGucGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 103398 0.66 0.922401
Target:  5'- uGCAGccuUGGCGGCcuuGGCuGCAGCcuucguggccuuGGCGGCc -3'
miRNA:   3'- -UGUC---AUCGUCG---UCGcCGUCG------------UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 281788 0.66 0.922401
Target:  5'- cGCGuGUGGgaaCGGCGGgGGCAGgGGCcggGGCg -3'
miRNA:   3'- -UGU-CAUC---GUCGUCgCCGUCgUCG---UCG- -5'
10410 3' -57.6 NC_002687.1 + 11534 0.67 0.916977
Target:  5'- gACAcgAGCGGUaccAGCGGagauCAGCAGCGGa -3'
miRNA:   3'- -UGUcaUCGUCG---UCGCC----GUCGUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 174023 0.67 0.916977
Target:  5'- uAUAGUGGCAGaUGGCGGUAGUcuucucaucGCAcGCa -3'
miRNA:   3'- -UGUCAUCGUC-GUCGCCGUCGu--------CGU-CG- -5'
10410 3' -57.6 NC_002687.1 + 85429 0.67 0.905466
Target:  5'- gACAGaGGguGUGGCGGCGauugggguuuucGCGGUAGa -3'
miRNA:   3'- -UGUCaUCguCGUCGCCGU------------CGUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 295563 0.67 0.905466
Target:  5'- gACGGUAGCGGCcaAGaUGGCGG-AGUuuuGGCg -3'
miRNA:   3'- -UGUCAUCGUCG--UC-GCCGUCgUCG---UCG- -5'
10410 3' -57.6 NC_002687.1 + 12265 0.67 0.903664
Target:  5'- cCAGUGGUcGCGaaacugggcgugacGCGGCuGC-GCAGCg -3'
miRNA:   3'- uGUCAUCGuCGU--------------CGCCGuCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 292676 0.67 0.901843
Target:  5'- uGCuGUGGCGGUgguuuugggcacgaaAGCGGCcGCGGCGu- -3'
miRNA:   3'- -UGuCAUCGUCG---------------UCGCCGuCGUCGUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.