miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 5' -59.9 NC_002687.1 + 332277 0.66 0.883276
Target:  5'- aCAGCGGCUcacaccauugcgGCGGCGGCgCUUG-GGCg- -3'
miRNA:   3'- -GUCGUCGA------------UGCUGUCG-GAGCgCCGgc -5'
10410 5' -59.9 NC_002687.1 + 328807 0.72 0.580077
Target:  5'- aCGGCuGCUugGugGGCUUCGaGGUCGu -3'
miRNA:   3'- -GUCGuCGAugCugUCGGAGCgCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 328105 0.71 0.665608
Target:  5'- aAGCGGCgACGACGGCUUCGCcauggaauuGCUGg -3'
miRNA:   3'- gUCGUCGaUGCUGUCGGAGCGc--------CGGC- -5'
10410 5' -59.9 NC_002687.1 + 316183 0.7 0.703292
Target:  5'- uCGGguGCgGCGGCGGCacccggCGCGGCgGa -3'
miRNA:   3'- -GUCguCGaUGCUGUCGga----GCGCCGgC- -5'
10410 5' -59.9 NC_002687.1 + 314407 0.7 0.721851
Target:  5'- cCAGguGCacggACGuuuccuCGGCCgaaCGCGGCCGc -3'
miRNA:   3'- -GUCguCGa---UGCu-----GUCGGa--GCGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 311745 0.7 0.712601
Target:  5'- gCGGCAGCUGCuGugAcGCacaCGCGGCUGu -3'
miRNA:   3'- -GUCGUCGAUG-CugU-CGga-GCGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 311447 0.66 0.901871
Target:  5'- aAGCA--UGUGGCGGCgCUgGCGGCCGa -3'
miRNA:   3'- gUCGUcgAUGCUGUCG-GAgCGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 310934 0.71 0.637073
Target:  5'- aCGGCGGUUGCGGCGcGCCaCGCacggcgaaauGGCCGc -3'
miRNA:   3'- -GUCGUCGAUGCUGU-CGGaGCG----------CCGGC- -5'
10410 5' -59.9 NC_002687.1 + 309980 0.68 0.784314
Target:  5'- gGGCAGCuUACGcagaagaaGCAGCCugUCGCggaGGCCa -3'
miRNA:   3'- gUCGUCG-AUGC--------UGUCGG--AGCG---CCGGc -5'
10410 5' -59.9 NC_002687.1 + 309184 0.67 0.840994
Target:  5'- uGGCAucgauGCUGCGGCGGagaCUgGCGGCg- -3'
miRNA:   3'- gUCGU-----CGAUGCUGUCg--GAgCGCCGgc -5'
10410 5' -59.9 NC_002687.1 + 303895 0.71 0.656111
Target:  5'- uGGUGGCUGCacuccgGACAGCCuUCGCgaaGGCCa -3'
miRNA:   3'- gUCGUCGAUG------CUGUCGG-AGCG---CCGGc -5'
10410 5' -59.9 NC_002687.1 + 303190 0.68 0.817564
Target:  5'- gCAGCAGCUGuagaAGcCCUCGuCGGCCc -3'
miRNA:   3'- -GUCGUCGAUgcugUC-GGAGC-GCCGGc -5'
10410 5' -59.9 NC_002687.1 + 298420 0.7 0.703292
Target:  5'- aAGCAcGCgcgcgGCGGCGGCC--GCGGCCu -3'
miRNA:   3'- gUCGU-CGa----UGCUGUCGGagCGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 298265 0.66 0.901871
Target:  5'- -uGCGGCUGgagcCGA-AGCCUCaCGGCCu -3'
miRNA:   3'- guCGUCGAU----GCUgUCGGAGcGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 295255 0.72 0.589529
Target:  5'- uGGC-GCUACGAgGgugcGCCUCGCGGCg- -3'
miRNA:   3'- gUCGuCGAUGCUgU----CGGAGCGCCGgc -5'
10410 5' -59.9 NC_002687.1 + 293540 0.74 0.470545
Target:  5'- aCAGCAGCaGCGACAGCagcagcccccuCUCGCGGaauacaCGa -3'
miRNA:   3'- -GUCGUCGaUGCUGUCG-----------GAGCGCCg-----GC- -5'
10410 5' -59.9 NC_002687.1 + 292956 0.66 0.895871
Target:  5'- aCAGCGGgagGCGACAGCCccuUC-CGGCa- -3'
miRNA:   3'- -GUCGUCga-UGCUGUCGG---AGcGCCGgc -5'
10410 5' -59.9 NC_002687.1 + 291681 1.07 0.003862
Target:  5'- gCAGCAGCUACGACAGCCUCGCGGCCGc -3'
miRNA:   3'- -GUCGUCGAUGCUGUCGGAGCGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 284391 0.68 0.801204
Target:  5'- uCAGCAGgUGCaucGACAGCUUCcggaGCGGCa- -3'
miRNA:   3'- -GUCGUCgAUG---CUGUCGGAG----CGCCGgc -5'
10410 5' -59.9 NC_002687.1 + 283894 0.68 0.801204
Target:  5'- gCAGCAGCaGCGGCugGGgCUUGUGaGCCa -3'
miRNA:   3'- -GUCGUCGaUGCUG--UCgGAGCGC-CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.