Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10410 | 5' | -59.9 | NC_002687.1 | + | 39415 | 0.71 | 0.656111 |
Target: 5'- uCAGCAGCUcgcggGCGACaugagcguGGCCuUCGCgGGCUGc -3' miRNA: 3'- -GUCGUCGA-----UGCUG--------UCGG-AGCG-CCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 154316 | 0.68 | 0.79113 |
Target: 5'- uCGGCgAGCUGCGcaacugcgaccaaGCGGUCgccaaguUCGUGGCCGa -3' miRNA: 3'- -GUCG-UCGAUGC-------------UGUCGG-------AGCGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 309980 | 0.68 | 0.784314 |
Target: 5'- gGGCAGCuUACGcagaagaaGCAGCCugUCGCggaGGCCa -3' miRNA: 3'- gUCGUCG-AUGC--------UGUCGG--AGCG---CCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 153254 | 0.69 | 0.76695 |
Target: 5'- gCAGCAGCaGCaGCGGCCUCGUccuGGUa- -3' miRNA: 3'- -GUCGUCGaUGcUGUCGGAGCG---CCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 258828 | 0.69 | 0.74917 |
Target: 5'- -cGguGCUGCGACGuCUUCGUGGCa- -3' miRNA: 3'- guCguCGAUGCUGUcGGAGCGCCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 159175 | 0.69 | 0.740143 |
Target: 5'- cCGGCGGCgACGGCGGUCcgucguugUCGCcGCCGu -3' miRNA: 3'- -GUCGUCGaUGCUGUCGG--------AGCGcCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 314407 | 0.7 | 0.721851 |
Target: 5'- cCAGguGCacggACGuuuccuCGGCCgaaCGCGGCCGc -3' miRNA: 3'- -GUCguCGa---UGCu-----GUCGGa--GCGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 298420 | 0.7 | 0.703292 |
Target: 5'- aAGCAcGCgcgcgGCGGCGGCC--GCGGCCu -3' miRNA: 3'- gUCGU-CGa----UGCUGUCGGagCGCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 316183 | 0.7 | 0.703292 |
Target: 5'- uCGGguGCgGCGGCGGCacccggCGCGGCgGa -3' miRNA: 3'- -GUCguCGaUGCUGUCGga----GCGCCGgC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 159226 | 0.68 | 0.801204 |
Target: 5'- uGGUAGCUuucACGuuGGCCUUGUcgacGGCCGc -3' miRNA: 3'- gUCGUCGA---UGCugUCGGAGCG----CCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 303190 | 0.68 | 0.817564 |
Target: 5'- gCAGCAGCUGuagaAGcCCUCGuCGGCCc -3' miRNA: 3'- -GUCGUCGAUgcugUC-GGAGC-GCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 256511 | 0.68 | 0.817564 |
Target: 5'- gAGUAGaCgucGCGgcACAGCUUCGCGGCUc -3' miRNA: 3'- gUCGUC-Ga--UGC--UGUCGGAGCGCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 311447 | 0.66 | 0.901871 |
Target: 5'- aAGCA--UGUGGCGGCgCUgGCGGCCGa -3' miRNA: 3'- gUCGUcgAUGCUGUCG-GAgCGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 18581 | 0.66 | 0.895871 |
Target: 5'- -cGguGCUGCGACGGUgUCGUccuGCUGu -3' miRNA: 3'- guCguCGAUGCUGUCGgAGCGc--CGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 261994 | 0.66 | 0.889041 |
Target: 5'- gCAGCGGCUgucugugGC-ACAGuUUUCGUGGCCa -3' miRNA: 3'- -GUCGUCGA-------UGcUGUC-GGAGCGCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 332277 | 0.66 | 0.883276 |
Target: 5'- aCAGCGGCUcacaccauugcgGCGGCGGCgCUUG-GGCg- -3' miRNA: 3'- -GUCGUCGA------------UGCUGUCG-GAGCgCCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 254865 | 0.66 | 0.876687 |
Target: 5'- aGGCAG--AUGGCGGCCUUGuCGGCa- -3' miRNA: 3'- gUCGUCgaUGCUGUCGGAGC-GCCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 168755 | 0.66 | 0.876687 |
Target: 5'- cCGGuCGGCUccugUGuCAGCCUCuucuuuuuuGCGGCCGg -3' miRNA: 3'- -GUC-GUCGAu---GCuGUCGGAG---------CGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 41332 | 0.67 | 0.862945 |
Target: 5'- uCAGCAGCU-CGACGcuuucGCCagaGCGGCg- -3' miRNA: 3'- -GUCGUCGAuGCUGU-----CGGag-CGCCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 309184 | 0.67 | 0.840994 |
Target: 5'- uGGCAucgauGCUGCGGCGGagaCUgGCGGCg- -3' miRNA: 3'- gUCGU-----CGAUGCUGUCg--GAgCGCCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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