Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10434 | 3' | -61.9 | NC_002687.1 | + | 278941 | 0.66 | 0.842964 |
Target: 5'- cACCuuuaucgGUGGUGGCaGCGCagggggGGGCa -3' miRNA: 3'- -UGGuaa----CGCCGCCGcCGCGaa----CCCGc -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 280962 | 0.66 | 0.842964 |
Target: 5'- gGCCugggugGCGGCaGCGGCGgCcgGGGUu -3' miRNA: 3'- -UGGuaa---CGCCGcCGCCGC-GaaCCCGc -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 283583 | 0.66 | 0.842964 |
Target: 5'- uGCCAaacaGC-GUGGUGaaGCGCUUGGGCu -3' miRNA: 3'- -UGGUaa--CGcCGCCGC--CGCGAACCCGc -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 241871 | 0.66 | 0.835448 |
Target: 5'- gGCCAa--CGGUGGCGGCGUgacuuucGGCa -3' miRNA: 3'- -UGGUaacGCCGCCGCCGCGaac----CCGc -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 291572 | 0.66 | 0.835448 |
Target: 5'- uGCCGUUGgGGCuGUGGUcaucuuuucuGCUUccGGGCa -3' miRNA: 3'- -UGGUAACgCCGcCGCCG----------CGAA--CCCGc -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 119440 | 0.66 | 0.835448 |
Target: 5'- cACCGUUGCGGUGGaGGCGU--GGa-- -3' miRNA: 3'- -UGGUAACGCCGCCgCCGCGaaCCcgc -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 34734 | 0.66 | 0.830863 |
Target: 5'- aGCCAUUGCGucauacaauagguuaGCGGCGGCGUcaaccuUUGucuggucguaaGGCu -3' miRNA: 3'- -UGGUAACGC---------------CGCCGCCGCG------AAC-----------CCGc -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 173584 | 0.66 | 0.827776 |
Target: 5'- gGCgGagGCGGaGGCGGagGCggGGGCGg -3' miRNA: 3'- -UGgUaaCGCCgCCGCCg-CGaaCCCGC- -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 130723 | 0.66 | 0.827776 |
Target: 5'- gGCgGUgGUGGUGGUGGCGgUggcgGuGGCGa -3' miRNA: 3'- -UGgUAaCGCCGCCGCCGCgAa---C-CCGC- -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 160316 | 0.66 | 0.819953 |
Target: 5'- gGCCuugGCGGCGGCuGC-CUUGGcCGc -3' miRNA: 3'- -UGGuaaCGCCGCCGcCGcGAACCcGC- -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 212353 | 0.66 | 0.819953 |
Target: 5'- cACCGUcgacaGCGGUGGUGGCaGuCUUGGuCGa -3' miRNA: 3'- -UGGUAa----CGCCGCCGCCG-C-GAACCcGC- -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 291977 | 0.66 | 0.819953 |
Target: 5'- uACCAUaaacgUGCGGCGG-GGCuacuGUUUGGuGCc -3' miRNA: 3'- -UGGUA-----ACGCCGCCgCCG----CGAACC-CGc -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 225584 | 0.66 | 0.811986 |
Target: 5'- gGCCGgaGCgGGgGGUGGUGCUggagacGGCGg -3' miRNA: 3'- -UGGUaaCG-CCgCCGCCGCGAac----CCGC- -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 281781 | 0.66 | 0.803881 |
Target: 5'- cCCGUUGCgcgugugggaacGGCGGgGGCagggGCcgGGGCGc -3' miRNA: 3'- uGGUAACG------------CCGCCgCCG----CGaaCCCGC- -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 225489 | 0.67 | 0.793149 |
Target: 5'- aGCUuacGCGGCGGCGGCgGCggaacguaagaggaaGGGUGc -3' miRNA: 3'- -UGGuaaCGCCGCCGCCG-CGaa-------------CCCGC- -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 107270 | 0.67 | 0.787283 |
Target: 5'- gUCAUUGCGGCGGCcuucGCGUcagcacGGGUa -3' miRNA: 3'- uGGUAACGCCGCCGc---CGCGaa----CCCGc -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 80619 | 0.67 | 0.770213 |
Target: 5'- uGCCAUgGCGGUGGUcgcgGGCGUuugccUUGGGa- -3' miRNA: 3'- -UGGUAaCGCCGCCG----CCGCG-----AACCCgc -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 159320 | 0.67 | 0.761519 |
Target: 5'- uCCGUUGUcgGGCGcGUGGaaccCUUGGGCGu -3' miRNA: 3'- uGGUAACG--CCGC-CGCCgc--GAACCCGC- -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 225012 | 0.67 | 0.761519 |
Target: 5'- aGCUGgaGCgGGUGGUGGCGU--GGGCGu -3' miRNA: 3'- -UGGUaaCG-CCGCCGCCGCGaaCCCGC- -5' |
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10434 | 3' | -61.9 | NC_002687.1 | + | 103680 | 0.68 | 0.743846 |
Target: 5'- uCUGUUGcCGGUGGCGaaaGCUuucUGGGCGa -3' miRNA: 3'- uGGUAAC-GCCGCCGCcg-CGA---ACCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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