Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10434 | 5' | -57.9 | NC_002687.1 | + | 313376 | 0.66 | 0.957308 |
Target: 5'- gGcCGGUcgCGUGACCGCgGUCGagGa -3' miRNA: 3'- aC-GCCGuaGUACUGGUGgCGGCagCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 305860 | 0.66 | 0.956243 |
Target: 5'- cUGUGGCAgCAuguUGGCuCACCgugucaaacgguaaGCCGUCGa -3' miRNA: 3'- -ACGCCGUaGU---ACUG-GUGG--------------CGGCAGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 240052 | 0.66 | 0.956243 |
Target: 5'- gGCGGCGUCugGACCGugcuggucguacacCCGCCGcuuagCGg -3' miRNA: 3'- aCGCCGUAGuaCUGGU--------------GGCGGCa----GCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 166311 | 0.66 | 0.95369 |
Target: 5'- -uCGGagcuUAUCuUGGCCGCCGCCG-CGUu -3' miRNA: 3'- acGCC----GUAGuACUGGUGGCGGCaGCA- -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 249545 | 0.66 | 0.95369 |
Target: 5'- cGgGGCGUCGgacgGAgaaagaagcguCCaAUCGCCGUCGg -3' miRNA: 3'- aCgCCGUAGUa---CU-----------GG-UGGCGGCAGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 291662 | 0.66 | 0.95369 |
Target: 5'- cGCGGCcgC-UGGgCACCGCgCGagGUa -3' miRNA: 3'- aCGCCGuaGuACUgGUGGCG-GCagCA- -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 292305 | 0.66 | 0.95369 |
Target: 5'- cGCGGCcgcuuUCGUGcccaaaACCACCGCCa---- -3' miRNA: 3'- aCGCCGu----AGUAC------UGGUGGCGGcagca -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 81469 | 0.66 | 0.95369 |
Target: 5'- gUGUGGCcgccucGUCAUcACCAuucccguugUCGCCGUCGg -3' miRNA: 3'- -ACGCCG------UAGUAcUGGU---------GGCGGCAGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 65218 | 0.66 | 0.94987 |
Target: 5'- -aCGGCAUCAUGuGCCGCCcacaaagcaGCCaaaaGUCGa -3' miRNA: 3'- acGCCGUAGUAC-UGGUGG---------CGG----CAGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 168894 | 0.66 | 0.94987 |
Target: 5'- cGUGGCccgCAUGGCCGaagacaUgGCCGUUGUc -3' miRNA: 3'- aCGCCGua-GUACUGGU------GgCGGCAGCA- -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 200115 | 0.66 | 0.94987 |
Target: 5'- gUGcCGGCGaCGacGGCCGCgCGCCGUUGa -3' miRNA: 3'- -AC-GCCGUaGUa-CUGGUG-GCGGCAGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 94349 | 0.66 | 0.945846 |
Target: 5'- gGCGGUGUCAUGAgucuCUACUGCgGcuUCGg -3' miRNA: 3'- aCGCCGUAGUACU----GGUGGCGgC--AGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 159164 | 0.66 | 0.945846 |
Target: 5'- gGCGGUccGUCGUugUCGCCGCCGUg-- -3' miRNA: 3'- aCGCCG--UAGUAcuGGUGGCGGCAgca -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 212334 | 0.66 | 0.945846 |
Target: 5'- -uCGGCGUCuucgGGCuCGCCaCCGUCGa -3' miRNA: 3'- acGCCGUAGua--CUG-GUGGcGGCAGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 329721 | 0.66 | 0.945846 |
Target: 5'- cGCcGaaacaGUCGUaGAcCCGCUGCCGUCGUa -3' miRNA: 3'- aCGcCg----UAGUA-CU-GGUGGCGGCAGCA- -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 90038 | 0.66 | 0.941616 |
Target: 5'- -aCGGCAUcCAUGAUCGCgGCCuccGUUGUc -3' miRNA: 3'- acGCCGUA-GUACUGGUGgCGG---CAGCA- -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 105091 | 0.67 | 0.937177 |
Target: 5'- -aCGGCggCGUGGCCACCcacguacUCGUCGUc -3' miRNA: 3'- acGCCGuaGUACUGGUGGc------GGCAGCA- -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 327457 | 0.67 | 0.937177 |
Target: 5'- aGUGGCAcaucaUCAUcAUCAUCGCCG-CGUa -3' miRNA: 3'- aCGCCGU-----AGUAcUGGUGGCGGCaGCA- -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 215690 | 0.67 | 0.929638 |
Target: 5'- gGCGGuCgucguaaugucacugGUCGUGGCCGucacugUCGCCGUCGc -3' miRNA: 3'- aCGCC-G---------------UAGUACUGGU------GGCGGCAGCa -5' |
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10434 | 5' | -57.9 | NC_002687.1 | + | 57345 | 0.67 | 0.927669 |
Target: 5'- gGCGGUGUCc-GugCGCCGCCGa--- -3' miRNA: 3'- aCGCCGUAGuaCugGUGGCGGCagca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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