miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10468 5' -55 NC_002687.1 + 308326 0.65 0.991971
Target:  5'- cGUUCGACCCgUGUgUCUcUCGCGGGg -3'
miRNA:   3'- cCGAGCUGGGgACA-AGAcGGUGUUCg -5'
10468 5' -55 NC_002687.1 + 125471 0.65 0.991971
Target:  5'- aGGaCUUGGCgCa----CUGCCACGAGCa -3'
miRNA:   3'- -CC-GAGCUGgGgacaaGACGGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 244516 0.66 0.990888
Target:  5'- uGGCUCGuugUCCCUGUauUCaucGCgCACAcGCg -3'
miRNA:   3'- -CCGAGCu--GGGGACA--AGa--CG-GUGUuCG- -5'
10468 5' -55 NC_002687.1 + 18863 0.66 0.990888
Target:  5'- gGGCgcggUGGCCuCCUucugCUGCUACAggAGCa -3'
miRNA:   3'- -CCGa---GCUGG-GGAcaa-GACGGUGU--UCG- -5'
10468 5' -55 NC_002687.1 + 17804 0.66 0.989693
Target:  5'- aGCUCGGCCuCUUGaagCaGCCGCugcGGCu -3'
miRNA:   3'- cCGAGCUGG-GGACaa-GaCGGUGu--UCG- -5'
10468 5' -55 NC_002687.1 + 7702 0.66 0.989693
Target:  5'- -uCUCGAUCCgucgUUGUUCcaguUGCaCACAAGCg -3'
miRNA:   3'- ccGAGCUGGG----GACAAG----ACG-GUGUUCG- -5'
10468 5' -55 NC_002687.1 + 175044 0.66 0.989693
Target:  5'- cGGUUCGAgCCCCUugGUggauUCggaCGCAGGCg -3'
miRNA:   3'- -CCGAGCU-GGGGA--CA----AGacgGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 284662 0.66 0.988379
Target:  5'- aGGCgCaGCCCCUGgugCUGCCGgAAa- -3'
miRNA:   3'- -CCGaGcUGGGGACaa-GACGGUgUUcg -5'
10468 5' -55 NC_002687.1 + 11277 0.66 0.986938
Target:  5'- gGGgUCGGCacaacuCCCgugGUUUUGCCGauCGGGCg -3'
miRNA:   3'- -CCgAGCUG------GGGa--CAAGACGGU--GUUCG- -5'
10468 5' -55 NC_002687.1 + 293612 0.66 0.985364
Target:  5'- aGCUC-ACCCCUGUUCcaugcgUGCuCACAu-- -3'
miRNA:   3'- cCGAGcUGGGGACAAG------ACG-GUGUucg -5'
10468 5' -55 NC_002687.1 + 108282 0.66 0.985364
Target:  5'- aGGCUCGcUCCUUG-UCgGUCACGGGa -3'
miRNA:   3'- -CCGAGCuGGGGACaAGaCGGUGUUCg -5'
10468 5' -55 NC_002687.1 + 275684 0.67 0.983649
Target:  5'- aGCU-GACCCCUc-UCgGCCGCGAGa -3'
miRNA:   3'- cCGAgCUGGGGAcaAGaCGGUGUUCg -5'
10468 5' -55 NC_002687.1 + 180230 0.67 0.981786
Target:  5'- aGCUCGACCCCgcgcacgccuuUGUgagaGCUGCGAGg -3'
miRNA:   3'- cCGAGCUGGGG-----------ACAaga-CGGUGUUCg -5'
10468 5' -55 NC_002687.1 + 64922 0.67 0.981786
Target:  5'- -cCUCGACCCCaaa--UGCCuCGAGCc -3'
miRNA:   3'- ccGAGCUGGGGacaagACGGuGUUCG- -5'
10468 5' -55 NC_002687.1 + 106790 0.67 0.977588
Target:  5'- aGGuCUUGAUCCCcGUUUuaggggucgugaUGUCAUAGGCg -3'
miRNA:   3'- -CC-GAGCUGGGGaCAAG------------ACGGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 236381 0.67 0.977361
Target:  5'- cGCUCGAgCgauguacaUGUUCUGCCggcguucGCGAGCg -3'
miRNA:   3'- cCGAGCUgGgg------ACAAGACGG-------UGUUCG- -5'
10468 5' -55 NC_002687.1 + 159365 0.67 0.975241
Target:  5'- uGCUCGGCCCuCUccaggaUGgCACAAGCc -3'
miRNA:   3'- cCGAGCUGGG-GAcaag--ACgGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 287699 0.68 0.972718
Target:  5'- uGGCaUCGACCCCaccgugUGUgaagCUGCuCGCuugucaAGGCa -3'
miRNA:   3'- -CCG-AGCUGGGG------ACAa---GACG-GUG------UUCG- -5'
10468 5' -55 NC_002687.1 + 282304 0.68 0.972718
Target:  5'- cGGCaCcGCCCCUGcucCUGCCGCGAc- -3'
miRNA:   3'- -CCGaGcUGGGGACaa-GACGGUGUUcg -5'
10468 5' -55 NC_002687.1 + 247502 0.68 0.970015
Target:  5'- gGGCUUGccaauGCUCUUGUUggugGUCACGAGCg -3'
miRNA:   3'- -CCGAGC-----UGGGGACAAga--CGGUGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.