miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10478 5' -54.6 NC_002687.1 + 17832 0.66 0.996066
Target:  5'- aACGCCGcCGGGcuGCCUucuACACCaaagcUCGGc -3'
miRNA:   3'- cUGUGGCaGCCU--UGGA---UGUGGc----AGCC- -5'
10478 5' -54.6 NC_002687.1 + 113666 0.66 0.99546
Target:  5'- -cCGCCGUCGGcugcucGGCCUgu-CCGUgCGGg -3'
miRNA:   3'- cuGUGGCAGCC------UUGGAuguGGCA-GCC- -5'
10478 5' -54.6 NC_002687.1 + 23525 0.66 0.99546
Target:  5'- --aGCCGgguagUCGGggUCaaaUugACCGUCGGc -3'
miRNA:   3'- cugUGGC-----AGCCuuGG---AugUGGCAGCC- -5'
10478 5' -54.6 NC_002687.1 + 63766 0.66 0.99546
Target:  5'- gGGCGgCGUaUGGGAUCUcgcACGCCGaCGGg -3'
miRNA:   3'- -CUGUgGCA-GCCUUGGA---UGUGGCaGCC- -5'
10478 5' -54.6 NC_002687.1 + 184443 0.66 0.99546
Target:  5'- cGACcCCGUCGuGACCUACcGCCGcCu- -3'
miRNA:   3'- -CUGuGGCAGCcUUGGAUG-UGGCaGcc -5'
10478 5' -54.6 NC_002687.1 + 73351 0.66 0.994781
Target:  5'- aGACGCCGUCGaacAACC-ACGCCauGUCa- -3'
miRNA:   3'- -CUGUGGCAGCc--UUGGaUGUGG--CAGcc -5'
10478 5' -54.6 NC_002687.1 + 210805 0.66 0.994781
Target:  5'- -cCAuCCGcCGGAGCCgugACACUgaggaaguacuuGUCGGg -3'
miRNA:   3'- cuGU-GGCaGCCUUGGa--UGUGG------------CAGCC- -5'
10478 5' -54.6 NC_002687.1 + 97637 0.66 0.994781
Target:  5'- cGGCACCGugUCGGcggugACACCGaCGGg -3'
miRNA:   3'- -CUGUGGC--AGCCuuggaUGUGGCaGCC- -5'
10478 5' -54.6 NC_002687.1 + 168402 0.66 0.994021
Target:  5'- uGACACa---GGAGCCgaccggggGCACCGUccCGGg -3'
miRNA:   3'- -CUGUGgcagCCUUGGa-------UGUGGCA--GCC- -5'
10478 5' -54.6 NC_002687.1 + 160179 0.66 0.993941
Target:  5'- -cCGCCGgaggacgaaGGAGCUUgaggaggGCAUCGUCGGg -3'
miRNA:   3'- cuGUGGCag-------CCUUGGA-------UGUGGCAGCC- -5'
10478 5' -54.6 NC_002687.1 + 97792 0.66 0.993176
Target:  5'- uGGCACCGcUGGcccACCgGCACCaUCGGc -3'
miRNA:   3'- -CUGUGGCaGCCu--UGGaUGUGGcAGCC- -5'
10478 5' -54.6 NC_002687.1 + 96947 0.66 0.993176
Target:  5'- aACGgCGUCGGucgaugucgaGGCCUGCACCGg--- -3'
miRNA:   3'- cUGUgGCAGCC----------UUGGAUGUGGCagcc -5'
10478 5' -54.6 NC_002687.1 + 18165 0.66 0.993176
Target:  5'- aACGCCGcCGGGcuACCUucuACACCaaaguUCGGa -3'
miRNA:   3'- cUGUGGCaGCCU--UGGA---UGUGGc----AGCC- -5'
10478 5' -54.6 NC_002687.1 + 256581 0.66 0.993176
Target:  5'- cGugACCGUC---GCCUGCGCacccguGUCGGc -3'
miRNA:   3'- -CugUGGCAGccuUGGAUGUGg-----CAGCC- -5'
10478 5' -54.6 NC_002687.1 + 204959 0.66 0.993086
Target:  5'- cACGCCGUCGGcgauaGACgCUguggucgACACCGgcuUCGGc -3'
miRNA:   3'- cUGUGGCAGCC-----UUG-GA-------UGUGGC---AGCC- -5'
10478 5' -54.6 NC_002687.1 + 235227 0.66 0.993086
Target:  5'- gGACACCGagauuguUCGGGugaACC-ACGCCGUUa- -3'
miRNA:   3'- -CUGUGGC-------AGCCU---UGGaUGUGGCAGcc -5'
10478 5' -54.6 NC_002687.1 + 308393 0.67 0.992237
Target:  5'- aGGCcCCGggGGAugCUGCACCaGUUGa -3'
miRNA:   3'- -CUGuGGCagCCUugGAUGUGG-CAGCc -5'
10478 5' -54.6 NC_002687.1 + 18275 0.67 0.990052
Target:  5'- aACGCCGcCGGGcuGCCUucuACACCaaagcUCGGa -3'
miRNA:   3'- cUGUGGCaGCCU--UGGA---UGUGGc----AGCC- -5'
10478 5' -54.6 NC_002687.1 + 18054 0.67 0.990052
Target:  5'- aACGCCGcCGGGcuGCCUucuACACCaaaguUCGGa -3'
miRNA:   3'- cUGUGGCaGCCU--UGGA---UGUGGc----AGCC- -5'
10478 5' -54.6 NC_002687.1 + 17943 0.67 0.990052
Target:  5'- aACGCCGcCGGGcuGCCUucuACACCaaaguUCGGa -3'
miRNA:   3'- cUGUGGCaGCCU--UGGA---UGUGGc----AGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.