Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10539 | 5' | -49.9 | NC_002687.1 | + | 310957 | 0.66 | 0.999817 |
Target: 5'- ---aACCGUGCa-GUGAACUguACACu -3' miRNA: 3'- uaaaUGGUACGagCGCUUGGguUGUG- -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 318064 | 0.66 | 0.999817 |
Target: 5'- --gUGgCAUacGUUCGCGGAUCCAuCACg -3' miRNA: 3'- uaaAUgGUA--CGAGCGCUUGGGUuGUG- -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 251319 | 0.66 | 0.999708 |
Target: 5'- cGUUUGCgAUGCacUCGUaGACaCCGACGCc -3' miRNA: 3'- -UAAAUGgUACG--AGCGcUUG-GGUUGUG- -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 88567 | 0.66 | 0.999635 |
Target: 5'- ---cGCCGaaCUCGCGGcccGCgCCAGCGCg -3' miRNA: 3'- uaaaUGGUacGAGCGCU---UG-GGUUGUG- -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 204694 | 0.67 | 0.999545 |
Target: 5'- uGUUUGCCGauuucggGCUCuCGGAgaCCAACACg -3' miRNA: 3'- -UAAAUGGUa------CGAGcGCUUg-GGUUGUG- -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 215522 | 0.67 | 0.999437 |
Target: 5'- ---gGCCAUGCccUCGCuGACCCAGuCGu -3' miRNA: 3'- uaaaUGGUACG--AGCGcUUGGGUU-GUg -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 88673 | 0.67 | 0.999308 |
Target: 5'- ---gACCAUGaaCGCGAACUCAccccCGCg -3' miRNA: 3'- uaaaUGGUACgaGCGCUUGGGUu---GUG- -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 227059 | 0.67 | 0.999294 |
Target: 5'- ---cACCgGUGUUCGUGGaaacauuACCCGGCAUg -3' miRNA: 3'- uaaaUGG-UACGAGCGCU-------UGGGUUGUG- -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 118169 | 0.67 | 0.999154 |
Target: 5'- --cUGCgGUGCagUCGCaGAGCCCGuauGCGCc -3' miRNA: 3'- uaaAUGgUACG--AGCG-CUUGGGU---UGUG- -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 329083 | 0.67 | 0.999154 |
Target: 5'- -aUUAUgGUGCUUGUucACUCAGCACc -3' miRNA: 3'- uaAAUGgUACGAGCGcuUGGGUUGUG- -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 19436 | 0.67 | 0.998971 |
Target: 5'- ---aGCCAUGCUCGCuuGAcgcguACCUGGCGu -3' miRNA: 3'- uaaaUGGUACGAGCG--CU-----UGGGUUGUg -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 195271 | 0.67 | 0.998971 |
Target: 5'- ---aGCCAUGCUCGCuuGAcgcguACCUGGCGu -3' miRNA: 3'- uaaaUGGUACGAGCG--CU-----UGGGUUGUg -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 26767 | 0.67 | 0.998971 |
Target: 5'- --cUGCUAUGUcagaCGCGAGCCCGGgAUu -3' miRNA: 3'- uaaAUGGUACGa---GCGCUUGGGUUgUG- -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 111083 | 0.67 | 0.998971 |
Target: 5'- -gUUGCUGUGCau-CGGAUCCGACGCg -3' miRNA: 3'- uaAAUGGUACGagcGCUUGGGUUGUG- -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 220862 | 0.67 | 0.998971 |
Target: 5'- ---aGCCAUGCUCGCuuGAcgcguACCUGGCGu -3' miRNA: 3'- uaaaUGGUACGAGCG--CU-----UGGGUUGUg -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 137950 | 0.68 | 0.998755 |
Target: 5'- ---aACCuuUGCUCGacuuCGuACCCGACGCg -3' miRNA: 3'- uaaaUGGu-ACGAGC----GCuUGGGUUGUG- -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 13654 | 0.69 | 0.996493 |
Target: 5'- --aUACCugcUGCgUCGCucuuACCCAACGCa -3' miRNA: 3'- uaaAUGGu--ACG-AGCGcu--UGGGUUGUG- -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 199276 | 0.69 | 0.996493 |
Target: 5'- --aUACUAUGCUCGCGAugaaGACAUc -3' miRNA: 3'- uaaAUGGUACGAGCGCUugggUUGUG- -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 297387 | 0.69 | 0.995226 |
Target: 5'- ---gGCCAUGCucaUCGCG-ACCCGAUu- -3' miRNA: 3'- uaaaUGGUACG---AGCGCuUGGGUUGug -5' |
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10539 | 5' | -49.9 | NC_002687.1 | + | 76607 | 0.69 | 0.994466 |
Target: 5'- --aUGCCAucUGCcCGCGGuCCCAGCGu -3' miRNA: 3'- uaaAUGGU--ACGaGCGCUuGGGUUGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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