miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10546 5' -46.9 NC_002687.1 + 30483 0.66 1
Target:  5'- uCGagGCGAUugGAgacgGGUGUGCc-- -3'
miRNA:   3'- -GCagCGUUGugCUaaa-UCACACGaug -5'
10546 5' -46.9 NC_002687.1 + 281942 0.66 1
Target:  5'- gGUCGCGGCAgGAgcagGGgcgGUGCc-- -3'
miRNA:   3'- gCAGCGUUGUgCUaaa-UCa--CACGaug -5'
10546 5' -46.9 NC_002687.1 + 223985 0.66 1
Target:  5'- aCGUCGaacgcuGGCACaGAagaacgUGGUGUGUUGCg -3'
miRNA:   3'- -GCAGCg-----UUGUG-CUaa----AUCACACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 64249 0.66 1
Target:  5'- uCGUUGCAGagAUGAagcGGUGUGUUGCc -3'
miRNA:   3'- -GCAGCGUUg-UGCUaaaUCACACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 21594 0.66 1
Target:  5'- cCGcUCGCAGCACaGAUg-AGUG-GCUGg -3'
miRNA:   3'- -GC-AGCGUUGUG-CUAaaUCACaCGAUg -5'
10546 5' -46.9 NC_002687.1 + 54955 0.66 0.999998
Target:  5'- --aCGUAAUAgGAUUUAucGUGCUGCa -3'
miRNA:   3'- gcaGCGUUGUgCUAAAUcaCACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 296641 0.66 0.999998
Target:  5'- cCGUCGUAGCGuCGAUc--GUGaUGCUGu -3'
miRNA:   3'- -GCAGCGUUGU-GCUAaauCAC-ACGAUg -5'
10546 5' -46.9 NC_002687.1 + 29062 0.67 0.999997
Target:  5'- uGUCGCAuACACGGggaUGGUGgccuuggagucgaucGCUGCc -3'
miRNA:   3'- gCAGCGU-UGUGCUaa-AUCACa--------------CGAUG- -5'
10546 5' -46.9 NC_002687.1 + 64521 0.67 0.999995
Target:  5'- aG-CGguGCAUGAUgugGGUGUGCcggACa -3'
miRNA:   3'- gCaGCguUGUGCUAaa-UCACACGa--UG- -5'
10546 5' -46.9 NC_002687.1 + 230108 0.67 0.999994
Target:  5'- gCGaCGUAACACGAUUUAucGUGaUGCa-- -3'
miRNA:   3'- -GCaGCGUUGUGCUAAAU--CAC-ACGaug -5'
10546 5' -46.9 NC_002687.1 + 230594 0.67 0.999994
Target:  5'- gCGaCGUAACACGAUUUAucGUGaUGCa-- -3'
miRNA:   3'- -GCaGCGUUGUGCUAAAU--CAC-ACGaug -5'
10546 5' -46.9 NC_002687.1 + 230714 0.67 0.999994
Target:  5'- gCGaCGUAACACGAUUUAucGUGaUGCa-- -3'
miRNA:   3'- -GCaGCGUUGUGCUAAAU--CAC-ACGaug -5'
10546 5' -46.9 NC_002687.1 + 23851 0.68 0.999991
Target:  5'- uGUCGC-GCA-GAUaUGGUGUGCUc- -3'
miRNA:   3'- gCAGCGuUGUgCUAaAUCACACGAug -5'
10546 5' -46.9 NC_002687.1 + 310753 0.68 0.999988
Target:  5'- --aCGCAcGCACGAUggcgggUAGUgcacggaaGUGCUACg -3'
miRNA:   3'- gcaGCGU-UGUGCUAa-----AUCA--------CACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 228030 0.68 0.999988
Target:  5'- --aCGUAACACGAUUUGucGUGCUuCg -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAuG- -5'
10546 5' -46.9 NC_002687.1 + 228548 0.68 0.999988
Target:  5'- --aCGUAACACGAUUUGucGUGCUuCg -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAuG- -5'
10546 5' -46.9 NC_002687.1 + 11722 0.68 0.999983
Target:  5'- uGUCGUGACAUGugucuGUGUGCa-- -3'
miRNA:   3'- gCAGCGUUGUGCuaaauCACACGaug -5'
10546 5' -46.9 NC_002687.1 + 53761 0.68 0.999969
Target:  5'- --aCGUAACACGAUUUAucGUGCUuCg -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAuG- -5'
10546 5' -46.9 NC_002687.1 + 53890 0.68 0.999969
Target:  5'- --aCGUAACACGAUUUAucGUGCUuCa -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAuG- -5'
10546 5' -46.9 NC_002687.1 + 54084 0.68 0.999969
Target:  5'- --aCGUAACACGAUUUAucGUGCUuCa -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.