miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10584 5' -55.4 NC_002687.1 + 85522 0.66 0.984637
Target:  5'- gGCUUGUugUGCCGcUGCGCuACgGACc- -3'
miRNA:   3'- -UGGACAugGCGGC-AUGUG-UGgCUGuu -5'
10584 5' -55.4 NC_002687.1 + 155518 0.66 0.984637
Target:  5'- --aUGUgcacACCGCCGUAgACACCG-CGu -3'
miRNA:   3'- uggACA----UGGCGGCAUgUGUGGCuGUu -5'
10584 5' -55.4 NC_002687.1 + 137629 0.66 0.982847
Target:  5'- cACCUGUACC-UCGUGCucgaguACGCCGGa-- -3'
miRNA:   3'- -UGGACAUGGcGGCAUG------UGUGGCUguu -5'
10584 5' -55.4 NC_002687.1 + 28982 0.66 0.982847
Target:  5'- cACCg--GCCGCCGaGCACcuGCCGAg-- -3'
miRNA:   3'- -UGGacaUGGCGGCaUGUG--UGGCUguu -5'
10584 5' -55.4 NC_002687.1 + 136702 0.66 0.980903
Target:  5'- uCCUGUucuucAUCGUCGUGCGCA-UGACAAc -3'
miRNA:   3'- uGGACA-----UGGCGGCAUGUGUgGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 98003 0.66 0.97653
Target:  5'- cACCcgucggUGUcACCGCCG-ACACgguGCCGGCAc -3'
miRNA:   3'- -UGG------ACA-UGGCGGCaUGUG---UGGCUGUu -5'
10584 5' -55.4 NC_002687.1 + 128808 0.66 0.97653
Target:  5'- -gUUGUGCCGCCGccuccACGCACCGu--- -3'
miRNA:   3'- ugGACAUGGCGGCa----UGUGUGGCuguu -5'
10584 5' -55.4 NC_002687.1 + 323970 0.67 0.974086
Target:  5'- aACCUuc-CCGCCGgcCACGCCaGCAAa -3'
miRNA:   3'- -UGGAcauGGCGGCauGUGUGGcUGUU- -5'
10584 5' -55.4 NC_002687.1 + 324737 0.67 0.974086
Target:  5'- aACCUuc-CCGCCGgcCACGCCaGCAAa -3'
miRNA:   3'- -UGGAcauGGCGGCauGUGUGGcUGUU- -5'
10584 5' -55.4 NC_002687.1 + 325121 0.67 0.974086
Target:  5'- aACCUuc-CCGCCGgcCACGCCaGCAAa -3'
miRNA:   3'- -UGGAcauGGCGGCauGUGUGGcUGUU- -5'
10584 5' -55.4 NC_002687.1 + 324354 0.67 0.974086
Target:  5'- aACCUuc-CCGCCGgcCACGCCaGCAAa -3'
miRNA:   3'- -UGGAcauGGCGGCauGUGUGGcUGUU- -5'
10584 5' -55.4 NC_002687.1 + 133003 0.67 0.973318
Target:  5'- aGCCUGUcggaaauagacucuACCGuuGcuUACGCCGACGu -3'
miRNA:   3'- -UGGACA--------------UGGCggCauGUGUGGCUGUu -5'
10584 5' -55.4 NC_002687.1 + 317456 0.67 0.971463
Target:  5'- cACCagGUuCCGCCGccacaugGC-CACCGACAAc -3'
miRNA:   3'- -UGGa-CAuGGCGGCa------UGuGUGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 219185 0.67 0.965653
Target:  5'- uCUUGUACUGCUGUACAUACaaaaGAgAGu -3'
miRNA:   3'- uGGACAUGGCGGCAUGUGUGg---CUgUU- -5'
10584 5' -55.4 NC_002687.1 + 140392 0.67 0.965653
Target:  5'- uGCCUGUGUCuCaCGUACACAuauCCGACGAc -3'
miRNA:   3'- -UGGACAUGGcG-GCAUGUGU---GGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 276160 0.67 0.965653
Target:  5'- aACgUGaagGCCGCgGU-CGCGCCGGCGu -3'
miRNA:   3'- -UGgACa--UGGCGgCAuGUGUGGCUGUu -5'
10584 5' -55.4 NC_002687.1 + 47953 0.67 0.962456
Target:  5'- uCCgcGUACUGCUGUGCAaaugcuGCCGACGGu -3'
miRNA:   3'- uGGa-CAUGGCGGCAUGUg-----UGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 272621 0.68 0.951642
Target:  5'- cCCUG-ACCGUCGaugACGCCGGCGAg -3'
miRNA:   3'- uGGACaUGGCGGCaugUGUGGCUGUU- -5'
10584 5' -55.4 NC_002687.1 + 203552 0.68 0.943375
Target:  5'- gGCCUggucuaacGUGCUcagGUCGUAUGCACCGGCGg -3'
miRNA:   3'- -UGGA--------CAUGG---CGGCAUGUGUGGCUGUu -5'
10584 5' -55.4 NC_002687.1 + 50101 0.69 0.924219
Target:  5'- -aCUGUACUGCUGUAUACugcuCCGAgAGc -3'
miRNA:   3'- ugGACAUGGCGGCAUGUGu---GGCUgUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.