miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10593 3' -59.6 NC_002687.1 + 201269 0.66 0.910681
Target:  5'- gGACgGUACCucgaaaaacaauuauGGCGGcguaaAGCAGAGACGGUa -3'
miRNA:   3'- -UUG-CGUGGc--------------CCGCC-----UCGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 309178 0.66 0.910117
Target:  5'- cGAUGCugC-GGCGGAGacu-GGCGGCg -3'
miRNA:   3'- -UUGCGugGcCCGCCUCgucuCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 11401 0.66 0.910117
Target:  5'- uAGCaGCAgCGGuaGCGGuggcAGCAGcGGCAGCa -3'
miRNA:   3'- -UUG-CGUgGCC--CGCC----UCGUCuCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 284368 0.66 0.909552
Target:  5'- uGACaGCACCaGaGGCGGcgcguucAGCAGGugcaucGACAGCu -3'
miRNA:   3'- -UUG-CGUGG-C-CCGCC-------UCGUCU------CUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 270406 0.66 0.906694
Target:  5'- --gGCuuCGGGCGGGGCugcggagggggacaaGGAGACuGUc -3'
miRNA:   3'- uugCGugGCCCGCCUCG---------------UCUCUGuCG- -5'
10593 3' -59.6 NC_002687.1 + 10471 0.66 0.90437
Target:  5'- gGugGCACauCGGGUgccgugucGGAuGCGGGGACGGa -3'
miRNA:   3'- -UugCGUG--GCCCG--------CCU-CGUCUCUGUCg -5'
10593 3' -59.6 NC_002687.1 + 10314 0.66 0.898418
Target:  5'- --aGCAgCaGuGGCGGcGGCAGuGGCGGCg -3'
miRNA:   3'- uugCGUgG-C-CCGCC-UCGUCuCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 226808 0.66 0.885908
Target:  5'- --gGUGCCGguGGCGGuGGCGGuGGCGGUg -3'
miRNA:   3'- uugCGUGGC--CCGCC-UCGUCuCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 25413 0.66 0.885908
Target:  5'- gGAUGCAC--GGCGGuGCAGGaguaccgcuacGACGGCg -3'
miRNA:   3'- -UUGCGUGgcCCGCCuCGUCU-----------CUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 313431 0.67 0.87261
Target:  5'- -uCGUAaaagaCGGGCaGAaauucugaaGCAGAGGCGGCg -3'
miRNA:   3'- uuGCGUg----GCCCGcCU---------CGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 145483 0.67 0.87261
Target:  5'- cGCGCGCCucGGC-GAGCAGAu-CGGCa -3'
miRNA:   3'- uUGCGUGGc-CCGcCUCGUCUcuGUCG- -5'
10593 3' -59.6 NC_002687.1 + 216830 0.67 0.865676
Target:  5'- cACGCACCGGGUuccGuCGuGGACAGCa -3'
miRNA:   3'- uUGCGUGGCCCGccuC-GUcUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 65948 0.67 0.858557
Target:  5'- cACGUACaCGGGgGGAaucGAGACAGUc -3'
miRNA:   3'- uUGCGUG-GCCCgCCUcguCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 291748 0.67 0.836144
Target:  5'- gAGCGC-CCGGGCa-AGCAGcGACcGCa -3'
miRNA:   3'- -UUGCGuGGCCCGccUCGUCuCUGuCG- -5'
10593 3' -59.6 NC_002687.1 + 268104 0.67 0.836144
Target:  5'- cGGgGCugCGGGgGGGGgGGGGAgGGg -3'
miRNA:   3'- -UUgCGugGCCCgCCUCgUCUCUgUCg -5'
10593 3' -59.6 NC_002687.1 + 11301 0.67 0.836144
Target:  5'- -uUGCcgAUCGGGCGGucAGCAGcaGCAGCa -3'
miRNA:   3'- uuGCG--UGGCCCGCC--UCGUCucUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 305210 0.68 0.82834
Target:  5'- --gGCACCGGaCGG-GCAGAGGCu-- -3'
miRNA:   3'- uugCGUGGCCcGCCuCGUCUCUGucg -5'
10593 3' -59.6 NC_002687.1 + 283204 0.68 0.82834
Target:  5'- --aGCACCaGGCGcGGCGGGGGCcGUg -3'
miRNA:   3'- uugCGUGGcCCGCcUCGUCUCUGuCG- -5'
10593 3' -59.6 NC_002687.1 + 145325 0.68 0.82834
Target:  5'- --gGCACCGaGGUGGcugacGCGGAcaaGGCGGCg -3'
miRNA:   3'- uugCGUGGC-CCGCCu----CGUCU---CUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 209849 0.68 0.820379
Target:  5'- gAACGCGCCuGGCGcGAGUGGAGGu--- -3'
miRNA:   3'- -UUGCGUGGcCCGC-CUCGUCUCUgucg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.