miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10593 3' -59.6 NC_002687.1 + 331014 1.09 0.003046
Target:  5'- gAACGCACCGGGCGGAGCAGAGACAGCu -3'
miRNA:   3'- -UUGCGUGGCCCGCCUCGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 316021 0.69 0.769701
Target:  5'- gAugGUGCCGGuGgGGAcgGUGGGGACGGUg -3'
miRNA:   3'- -UugCGUGGCC-CgCCU--CGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 313431 0.67 0.87261
Target:  5'- -uCGUAaaagaCGGGCaGAaauucugaaGCAGAGGCGGCg -3'
miRNA:   3'- uuGCGUg----GCCCGcCU---------CGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 309888 0.68 0.804013
Target:  5'- -uCGCuaUGGGUGGGGCGGugGGGCAGUg -3'
miRNA:   3'- uuGCGugGCCCGCCUCGUC--UCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 309178 0.66 0.910117
Target:  5'- cGAUGCugC-GGCGGAGacu-GGCGGCg -3'
miRNA:   3'- -UUGCGugGcCCGCCUCgucuCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 305210 0.68 0.82834
Target:  5'- --gGCACCGGaCGG-GCAGAGGCu-- -3'
miRNA:   3'- uugCGUGGCCcGCCuCGUCUCUGucg -5'
10593 3' -59.6 NC_002687.1 + 291748 0.67 0.836144
Target:  5'- gAGCGC-CCGGGCa-AGCAGcGACcGCa -3'
miRNA:   3'- -UUGCGuGGCCCGccUCGUCuCUGuCG- -5'
10593 3' -59.6 NC_002687.1 + 284368 0.66 0.909552
Target:  5'- uGACaGCACCaGaGGCGGcgcguucAGCAGGugcaucGACAGCu -3'
miRNA:   3'- -UUG-CGUGG-C-CCGCC-------UCGUCU------CUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 283204 0.68 0.82834
Target:  5'- --aGCACCaGGCGcGGCGGGGGCcGUg -3'
miRNA:   3'- uugCGUGGcCCGCcUCGUCUCUGuCG- -5'
10593 3' -59.6 NC_002687.1 + 281936 0.73 0.544154
Target:  5'- --aGCAUCGgucgcGGCaGGAGCAGGGGCGGUg -3'
miRNA:   3'- uugCGUGGC-----CCG-CCUCGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 280959 0.68 0.812268
Target:  5'- gGGgGC-CUGGGUGGcGGCAGcGGCGGCc -3'
miRNA:   3'- -UUgCGuGGCCCGCC-UCGUCuCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 278960 0.7 0.724448
Target:  5'- --aGCGCaGGGgGGGGCAGAccCAGCg -3'
miRNA:   3'- uugCGUGgCCCgCCUCGUCUcuGUCG- -5'
10593 3' -59.6 NC_002687.1 + 276386 0.73 0.525599
Target:  5'- gAGCGCACC---CGGGGUAGAGGCAGUc -3'
miRNA:   3'- -UUGCGUGGcccGCCUCGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 270406 0.66 0.906694
Target:  5'- --gGCuuCGGGCGGGGCugcggagggggacaaGGAGACuGUc -3'
miRNA:   3'- uugCGugGCCCGCCUCG---------------UCUCUGuCG- -5'
10593 3' -59.6 NC_002687.1 + 268104 0.67 0.836144
Target:  5'- cGGgGCugCGGGgGGGGgGGGGAgGGg -3'
miRNA:   3'- -UUgCGugGCCCgCCUCgUCUCUgUCg -5'
10593 3' -59.6 NC_002687.1 + 257381 0.7 0.715158
Target:  5'- cGACGCGCuCGGGCcaguguguaucGGAGguGuG-CAGCa -3'
miRNA:   3'- -UUGCGUG-GCCCG-----------CCUCguCuCuGUCG- -5'
10593 3' -59.6 NC_002687.1 + 226808 0.66 0.885908
Target:  5'- --gGUGCCGguGGCGGuGGCGGuGGCGGUg -3'
miRNA:   3'- uugCGUGGC--CCGCC-UCGUCuCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 225626 0.68 0.787102
Target:  5'- gGACGCACCgguGGGCGGucgAGCuGGAGcCGGa -3'
miRNA:   3'- -UUGCGUGG---CCCGCC---UCG-UCUCuGUCg -5'
10593 3' -59.6 NC_002687.1 + 225582 0.69 0.778459
Target:  5'- --gGgGCCGGaGCGGGGgguggugcUGGAGACGGCg -3'
miRNA:   3'- uugCgUGGCC-CGCCUC--------GUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 224907 0.69 0.778459
Target:  5'- gGugGCAUgugGuGGCGGAGgaGGAGACAGUg -3'
miRNA:   3'- -UugCGUGg--C-CCGCCUCg-UCUCUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.