miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10593 3' -59.6 NC_002687.1 + 309178 0.66 0.910117
Target:  5'- cGAUGCugC-GGCGGAGacu-GGCGGCg -3'
miRNA:   3'- -UUGCGugGcCCGCCUCgucuCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 276386 0.73 0.525599
Target:  5'- gAGCGCACC---CGGGGUAGAGGCAGUc -3'
miRNA:   3'- -UUGCGUGGcccGCCUCGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 58146 0.72 0.5828
Target:  5'- aGAUGCAaaccacccucucucaCGuGGCGGAG-AGAGACAGCg -3'
miRNA:   3'- -UUGCGUg--------------GC-CCGCCUCgUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 18672 0.7 0.686945
Target:  5'- -cCGCcCCcgaagcagGGGCaGGAGCAGGGGCAGg -3'
miRNA:   3'- uuGCGuGG--------CCCG-CCUCGUCUCUGUCg -5'
10593 3' -59.6 NC_002687.1 + 257381 0.7 0.715158
Target:  5'- cGACGCGCuCGGGCcaguguguaucGGAGguGuG-CAGCa -3'
miRNA:   3'- -UUGCGUG-GCCCG-----------CCUCguCuCuGUCG- -5'
10593 3' -59.6 NC_002687.1 + 88931 0.69 0.760835
Target:  5'- uGCGCGCUGGcGCGGGccGCgAGuucGGCGGCa -3'
miRNA:   3'- uUGCGUGGCC-CGCCU--CG-UCu--CUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 316021 0.69 0.769701
Target:  5'- gAugGUGCCGGuGgGGAcgGUGGGGACGGUg -3'
miRNA:   3'- -UugCGUGGCC-CgCCU--CGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 209849 0.68 0.820379
Target:  5'- gAACGCGCCuGGCGcGAGUGGAGGu--- -3'
miRNA:   3'- -UUGCGUGGcCCGC-CUCGUCUCUgucg -5'
10593 3' -59.6 NC_002687.1 + 305210 0.68 0.82834
Target:  5'- --gGCACCGGaCGG-GCAGAGGCu-- -3'
miRNA:   3'- uugCGUGGCCcGCCuCGUCUCUGucg -5'
10593 3' -59.6 NC_002687.1 + 291748 0.67 0.836144
Target:  5'- gAGCGC-CCGGGCa-AGCAGcGACcGCa -3'
miRNA:   3'- -UUGCGuGGCCCGccUCGUCuCUGuCG- -5'
10593 3' -59.6 NC_002687.1 + 268104 0.67 0.836144
Target:  5'- cGGgGCugCGGGgGGGGgGGGGAgGGg -3'
miRNA:   3'- -UUgCGugGCCCgCCUCgUCUCUgUCg -5'
10593 3' -59.6 NC_002687.1 + 216830 0.67 0.865676
Target:  5'- cACGCACCGGGUuccGuCGuGGACAGCa -3'
miRNA:   3'- uUGCGUGGCCCGccuC-GUcUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 10471 0.66 0.90437
Target:  5'- gGugGCACauCGGGUgccgugucGGAuGCGGGGACGGa -3'
miRNA:   3'- -UugCGUG--GCCCG--------CCU-CGUCUCUGUCg -5'
10593 3' -59.6 NC_002687.1 + 11348 0.7 0.715158
Target:  5'- --aGCAgCGGGUgucGGAGCAGcaGCAGCa -3'
miRNA:   3'- uugCGUgGCCCG---CCUCGUCucUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 173571 0.7 0.686945
Target:  5'- aGGCGCAggUgGaGGCGGAgGCGGAGGCGGa -3'
miRNA:   3'- -UUGCGU--GgC-CCGCCU-CGUCUCUGUCg -5'
10593 3' -59.6 NC_002687.1 + 281936 0.73 0.544154
Target:  5'- --aGCAUCGgucgcGGCaGGAGCAGGGGCGGUg -3'
miRNA:   3'- uugCGUGGC-----CCG-CCUCGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 224161 0.73 0.516411
Target:  5'- uGGCGCugGCgGuGGCGGuGGCGGGGGCAGUg -3'
miRNA:   3'- -UUGCG--UGgC-CCGCC-UCGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 200963 0.78 0.289089
Target:  5'- uGCGCGCuCGGGCGGGGCAGgcGGGCGuGUu -3'
miRNA:   3'- uUGCGUG-GCCCGCCUCGUC--UCUGU-CG- -5'
10593 3' -59.6 NC_002687.1 + 201877 0.8 0.225986
Target:  5'- cGCGCGCuCGGGCGGGGCAGGcGGguGUg -3'
miRNA:   3'- uUGCGUG-GCCCGCCUCGUCU-CUguCG- -5'
10593 3' -59.6 NC_002687.1 + 201269 0.66 0.910681
Target:  5'- gGACgGUACCucgaaaaacaauuauGGCGGcguaaAGCAGAGACGGUa -3'
miRNA:   3'- -UUG-CGUGGc--------------CCGCC-----UCGUCUCUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.