miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10596 3' -64 NC_002687.1 + 225853 0.7 0.509447
Target:  5'- cUUACGUUCcgcCGCCGCCGCCGCGu -3'
miRNA:   3'- aGGUGCGGGuucGCGGCGGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 260920 0.67 0.638292
Target:  5'- cCCACuccucauCCCAugAGcCGCUGCCGCCGuCAAg -3'
miRNA:   3'- aGGUGc------GGGU--UC-GCGGCGGCGGC-GUU- -5'
10596 3' -64 NC_002687.1 + 295516 0.67 0.638292
Target:  5'- -gCACGCaCC-GGCGCCGUgUGCUGCAGg -3'
miRNA:   3'- agGUGCG-GGuUCGCGGCG-GCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 311253 0.67 0.628934
Target:  5'- aUCCACGgggcccccuuuUCCAAuaauCGCCGCCGCaCGCGc -3'
miRNA:   3'- -AGGUGC-----------GGGUUc---GCGGCGGCG-GCGUu -5'
10596 3' -64 NC_002687.1 + 259915 0.68 0.58229
Target:  5'- gCCuguuUGCUCAAGuUGCCGgCGCCGCGc -3'
miRNA:   3'- aGGu---GCGGGUUC-GCGGCgGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 201315 0.68 0.581363
Target:  5'- gCCcCGCCCGAGCGCgcaugagccacugUGCCaaGCCGCc- -3'
miRNA:   3'- aGGuGCGGGUUCGCG-------------GCGG--CGGCGuu -5'
10596 3' -64 NC_002687.1 + 276322 0.69 0.563805
Target:  5'- aCCGCGUCCAcuUGCaucagcaGCUGCCGCAu -3'
miRNA:   3'- aGGUGCGGGUucGCGg------CGGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 284255 0.69 0.554619
Target:  5'- cUCACaaGCCCcAGcCGCUGCUGCUGCGAu -3'
miRNA:   3'- aGGUG--CGGGuUC-GCGGCGGCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 72940 0.7 0.513007
Target:  5'- aUCACGUuucuuuacucgugugCCGA-CGCCGCCGCCGCc- -3'
miRNA:   3'- aGGUGCG---------------GGUUcGCGGCGGCGGCGuu -5'
10596 3' -64 NC_002687.1 + 215776 0.67 0.638292
Target:  5'- cUUC-CGCUgAAGUcgucGUCGCCGCCGCAc -3'
miRNA:   3'- -AGGuGCGGgUUCG----CGGCGGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 18252 0.67 0.638292
Target:  5'- aCCAaaGCUCGgacucuugaAGCGCCGCUgcgGCCGCAAc -3'
miRNA:   3'- aGGUg-CGGGU---------UCGCGGCGG---CGGCGUU- -5'
10596 3' -64 NC_002687.1 + 298727 0.67 0.647646
Target:  5'- -gCACaGCUCGAGCGUCGCgGCacaCGCAAg -3'
miRNA:   3'- agGUG-CGGGUUCGCGGCGgCG---GCGUU- -5'
10596 3' -64 NC_002687.1 + 71828 0.66 0.739534
Target:  5'- ---gUGCCUAAGCGCCGUCGUgcuaGCGg -3'
miRNA:   3'- agguGCGGGUUCGCGGCGGCGg---CGUu -5'
10596 3' -64 NC_002687.1 + 200909 0.66 0.730582
Target:  5'- gUCUucCGCCCGAGCGUCGaCGUCGg-- -3'
miRNA:   3'- -AGGu-GCGGGUUCGCGGCgGCGGCguu -5'
10596 3' -64 NC_002687.1 + 299233 0.66 0.721559
Target:  5'- gCCGCGCCCGAGgGCaGCaGCCa--- -3'
miRNA:   3'- aGGUGCGGGUUCgCGgCGgCGGcguu -5'
10596 3' -64 NC_002687.1 + 3219 0.66 0.712472
Target:  5'- --gGCGCCaucGGCGCCcucgagaCCGCCGCAu -3'
miRNA:   3'- aggUGCGGgu-UCGCGGc------GGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 314391 0.66 0.712472
Target:  5'- uUCCuCGgCCGAaCGCgGCCGCUGUAGc -3'
miRNA:   3'- -AGGuGCgGGUUcGCGgCGGCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 166318 0.66 0.712472
Target:  5'- gUCACaCUCgGAGCuuaucuugGCCGCCGCCGCGu -3'
miRNA:   3'- aGGUGcGGG-UUCG--------CGGCGGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 225216 0.67 0.684895
Target:  5'- aCCGUGCC--GGCGCCGCCGCgucgGCGg -3'
miRNA:   3'- aGGUGCGGguUCGCGGCGGCGg---CGUu -5'
10596 3' -64 NC_002687.1 + 238234 0.67 0.647646
Target:  5'- aUCCugGUC--AGCGCCGaCGCCgGCAAc -3'
miRNA:   3'- -AGGugCGGguUCGCGGCgGCGG-CGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.