Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10597 | 5' | -48.1 | NC_002687.1 | + | 200409 | 0.66 | 0.999993 |
Target: 5'- uGUACGCc--GCCGgaugUCcCGAUGCCGUGc -3' miRNA: 3'- -CAUGUGuuuCGGC----AGuGCUAUGGUAU- -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 2779 | 0.66 | 0.999993 |
Target: 5'- -cGCACAGGGCCGUaccauccgugucUAUGAcACCGg- -3' miRNA: 3'- caUGUGUUUCGGCA------------GUGCUaUGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 164006 | 0.66 | 0.999993 |
Target: 5'- ----uCGAGGUCGUCGuCGGUACCGa- -3' miRNA: 3'- cauguGUUUCGGCAGU-GCUAUGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 3378 | 0.66 | 0.999991 |
Target: 5'- -cACACAugaGAGCCGUCACc---CCAUu -3' miRNA: 3'- caUGUGU---UUCGGCAGUGcuauGGUAu -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 6606 | 0.66 | 0.99999 |
Target: 5'- uUGCGCAugauuuaucugaagGAGCCGUUcgGgGAUGCCGa- -3' miRNA: 3'- cAUGUGU--------------UUCGGCAG--UgCUAUGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 280912 | 0.66 | 0.999987 |
Target: 5'- ---aACGAAGCC-UCAgCGAUGCCGg- -3' miRNA: 3'- caugUGUUUCGGcAGU-GCUAUGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 70576 | 0.66 | 0.999982 |
Target: 5'- -cGCGC-AGGUCGUCGCGGaaaaaagauuggUGCCAg- -3' miRNA: 3'- caUGUGuUUCGGCAGUGCU------------AUGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 238536 | 0.66 | 0.999982 |
Target: 5'- cGUACACGAAcgucaucGUCGUCAUGugcGCCAa- -3' miRNA: 3'- -CAUGUGUUU-------CGGCAGUGCua-UGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 200183 | 0.66 | 0.99998 |
Target: 5'- -aACACccguGGCCGUCGuaauaaauuacgcuCGGUGCCAa- -3' miRNA: 3'- caUGUGuu--UCGGCAGU--------------GCUAUGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 330574 | 0.66 | 0.999976 |
Target: 5'- cGUGCACAugccggcAGCCGUCgugGCGAUucaCGUAc -3' miRNA: 3'- -CAUGUGUu------UCGGCAG---UGCUAug-GUAU- -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 83677 | 0.66 | 0.999976 |
Target: 5'- gGUGuCGCu-AGCCGaCGgGAUGCCGUAg -3' miRNA: 3'- -CAU-GUGuuUCGGCaGUgCUAUGGUAU- -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 71883 | 0.66 | 0.999975 |
Target: 5'- -gACGCuacgaccguGGCCGUCgccuacgACGAUACCAc- -3' miRNA: 3'- caUGUGuu-------UCGGCAG-------UGCUAUGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 90607 | 0.67 | 0.999968 |
Target: 5'- ---uGCGAcGaCGUCACGAUGCCAg- -3' miRNA: 3'- caugUGUUuCgGCAGUGCUAUGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 164317 | 0.67 | 0.999968 |
Target: 5'- aGUACgagACAGAGUCGUCGgGAU-CCGa- -3' miRNA: 3'- -CAUG---UGUUUCGGCAGUgCUAuGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 93075 | 0.67 | 0.999968 |
Target: 5'- -aACACGAacGGUaccuuUCACGAUGCCGUGc -3' miRNA: 3'- caUGUGUU--UCGgc---AGUGCUAUGGUAU- -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 168089 | 0.67 | 0.999957 |
Target: 5'- -gGCGCAucuGacaCGUCACGAUAUCAc- -3' miRNA: 3'- caUGUGUuu-Cg--GCAGUGCUAUGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 309973 | 0.67 | 0.999941 |
Target: 5'- uUACGCAGaagaagcAGCCuGUCGCGGagGCCAg- -3' miRNA: 3'- cAUGUGUU-------UCGG-CAGUGCUa-UGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 333217 | 0.67 | 0.999925 |
Target: 5'- -gGCGCAGAGCguaUGUC-CGAcACCAUGc -3' miRNA: 3'- caUGUGUUUCG---GCAGuGCUaUGGUAU- -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 255331 | 0.67 | 0.999923 |
Target: 5'- --gUACGGAGCCGaCACGAUggcgcagGCCAg- -3' miRNA: 3'- cauGUGUUUCGGCaGUGCUA-------UGGUau -5' |
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10597 | 5' | -48.1 | NC_002687.1 | + | 238886 | 0.68 | 0.999837 |
Target: 5'- aUGCGCAcGGCUGUCAUGAg--CAUAg -3' miRNA: 3'- cAUGUGUuUCGGCAGUGCUaugGUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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