miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10698 5' -59.1 NC_002794.1 + 130391 0.66 0.862793
Target:  5'- aGGCcgCCUGGCUgucggACGC-CGCGaCCa- -3'
miRNA:   3'- -CCGuaGGACCGG-----UGUGuGCGCaGGgc -5'
10698 5' -59.1 NC_002794.1 + 102418 0.66 0.862793
Target:  5'- cGGCcguggCCgaGGCCGC-CACGCGcaugUCCGa -3'
miRNA:   3'- -CCGua---GGa-CCGGUGuGUGCGCa---GGGC- -5'
10698 5' -59.1 NC_002794.1 + 113656 0.66 0.862793
Target:  5'- cGGCGUCCUcGGCguCcaGCGCGgcgagcaggCCCGc -3'
miRNA:   3'- -CCGUAGGA-CCGguGugUGCGCa--------GGGC- -5'
10698 5' -59.1 NC_002794.1 + 123576 0.66 0.862066
Target:  5'- aGCG-CCacGGCCGC-CGCccgugcaGCGUCCCGg -3'
miRNA:   3'- cCGUaGGa-CCGGUGuGUG-------CGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 185753 0.66 0.855439
Target:  5'- cGCGUCCa-GCCGCcgGCGCGgccgCCCGu -3'
miRNA:   3'- cCGUAGGacCGGUGugUGCGCa---GGGC- -5'
10698 5' -59.1 NC_002794.1 + 182996 0.66 0.855439
Target:  5'- cGGCGcuucgCCgcggGcGCCcCGCGCGCG-CCCGc -3'
miRNA:   3'- -CCGUa----GGa---C-CGGuGUGUGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 93460 0.66 0.855439
Target:  5'- cGGCGUCCc-GCCGcCGCACGUGgCCa- -3'
miRNA:   3'- -CCGUAGGacCGGU-GUGUGCGCaGGgc -5'
10698 5' -59.1 NC_002794.1 + 125039 0.66 0.855439
Target:  5'- cGGCGcagaUCCUGGU---GCACGCGaaCCCGc -3'
miRNA:   3'- -CCGU----AGGACCGgugUGUGCGCa-GGGC- -5'
10698 5' -59.1 NC_002794.1 + 12391 0.66 0.847901
Target:  5'- cGCucgCCUGGCCGacaacCGCACGCGga-CGg -3'
miRNA:   3'- cCGua-GGACCGGU-----GUGUGCGCaggGC- -5'
10698 5' -59.1 NC_002794.1 + 57454 0.66 0.847901
Target:  5'- aGCA-CCUGcuCCACGCGCuGCG-CCCGc -3'
miRNA:   3'- cCGUaGGACc-GGUGUGUG-CGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 119107 0.66 0.847137
Target:  5'- gGGCGUCCagaUcggggacgcagaaGGCCugGCAgGCGUUCgGg -3'
miRNA:   3'- -CCGUAGG---A-------------CCGGugUGUgCGCAGGgC- -5'
10698 5' -59.1 NC_002794.1 + 78681 0.66 0.840183
Target:  5'- cGGCcgCC-GGCCGCAUGUGCGg-CCGa -3'
miRNA:   3'- -CCGuaGGaCCGGUGUGUGCGCagGGC- -5'
10698 5' -59.1 NC_002794.1 + 60965 0.66 0.840183
Target:  5'- aGCG-CCgGGCCuACGCGCGCcUCCgGa -3'
miRNA:   3'- cCGUaGGaCCGG-UGUGUGCGcAGGgC- -5'
10698 5' -59.1 NC_002794.1 + 138296 0.66 0.840183
Target:  5'- uGGCggCCuUGGCC-CGCACGCuGUCg-- -3'
miRNA:   3'- -CCGuaGG-ACCGGuGUGUGCG-CAGggc -5'
10698 5' -59.1 NC_002794.1 + 85563 0.66 0.840183
Target:  5'- cGGCuUCCU-GCCACGCGCGaccaauCGgggccCCCGg -3'
miRNA:   3'- -CCGuAGGAcCGGUGUGUGC------GCa----GGGC- -5'
10698 5' -59.1 NC_002794.1 + 55626 0.66 0.840183
Target:  5'- uGCAcgCUGGCCA-GCACGCGggCCGg -3'
miRNA:   3'- cCGUagGACCGGUgUGUGCGCagGGC- -5'
10698 5' -59.1 NC_002794.1 + 153662 0.66 0.835469
Target:  5'- cGCGUCC-GGCCGCcgguugugaggcucgACGCGCGaCCgGc -3'
miRNA:   3'- cCGUAGGaCCGGUG---------------UGUGCGCaGGgC- -5'
10698 5' -59.1 NC_002794.1 + 193307 0.66 0.832292
Target:  5'- cGC-UCC-GcGCCGCACGCaGCG-CCCGa -3'
miRNA:   3'- cCGuAGGaC-CGGUGUGUG-CGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 67222 0.66 0.832292
Target:  5'- cGGCG-CCgGGCgGCuaAC-CGCGUCUCGa -3'
miRNA:   3'- -CCGUaGGaCCGgUG--UGuGCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 180608 0.66 0.832292
Target:  5'- cGCG-CCgcgGGCCACgACACGgCGgCCCa -3'
miRNA:   3'- cCGUaGGa--CCGGUG-UGUGC-GCaGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.