miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 126597 0.66 0.915069
Target:  5'- gACUGagcgCCGAGgcCGGCGcCGACGucGCGGCg -3'
miRNA:   3'- -UGACa---GGCUC--GUCGUcGUUGU--CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 192852 0.66 0.915069
Target:  5'- ----aCCGAGCc-CAGCAcgaacCAGCGGCa -3'
miRNA:   3'- ugacaGGCUCGucGUCGUu----GUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 189662 0.66 0.915069
Target:  5'- gGCUGgCCGAGCGGUcGCccCGGcCGGg -3'
miRNA:   3'- -UGACaGGCUCGUCGuCGuuGUC-GCCg -5'
10699 3' -56.8 NC_002794.1 + 257 0.66 0.915069
Target:  5'- gACUGccgCCGcGCGcGCGGacgcgagGACGGCGGCc -3'
miRNA:   3'- -UGACa--GGCuCGU-CGUCg------UUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 90687 0.66 0.915069
Target:  5'- gGCUGUUCGugugcccGCGGCAggacgaaugguGCGACGugcucGCGGCc -3'
miRNA:   3'- -UGACAGGCu------CGUCGU-----------CGUUGU-----CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 87311 0.66 0.915069
Target:  5'- ----cCCG-GUAGCGGUccccagguccAGCGGCGGCa -3'
miRNA:   3'- ugacaGGCuCGUCGUCG----------UUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 60837 0.66 0.909187
Target:  5'- --cGUUCGAGCAGaagcucaccgcCGGCGACcuCGGCc -3'
miRNA:   3'- ugaCAGGCUCGUC-----------GUCGUUGucGCCG- -5'
10699 3' -56.8 NC_002794.1 + 112309 0.66 0.909187
Target:  5'- --gGUCCGAcuuCGGCGcCGACGGCGGg -3'
miRNA:   3'- ugaCAGGCUc--GUCGUcGUUGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 146600 0.66 0.909187
Target:  5'- aGCUGU-CGAGCgacgaaGGCGGCGAggacgucgaaGGCGGUa -3'
miRNA:   3'- -UGACAgGCUCG------UCGUCGUUg---------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 184501 0.66 0.903075
Target:  5'- --cGcCCGGGCGGCgcgGGCcccGCGcGCGGCg -3'
miRNA:   3'- ugaCaGGCUCGUCG---UCGu--UGU-CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 66835 0.66 0.903075
Target:  5'- cGCgacUCCGGGCGccgccgucggcGCGGCGagGCcGCGGCg -3'
miRNA:   3'- -UGac-AGGCUCGU-----------CGUCGU--UGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 141597 0.66 0.903075
Target:  5'- cGCgucgCCGGGCGGCucGGCGACcggcucGCGGUc -3'
miRNA:   3'- -UGaca-GGCUCGUCG--UCGUUGu-----CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 14650 0.66 0.903075
Target:  5'- gACg--CCGGcGCcGCGGCGucgguccgacucGCGGCGGCg -3'
miRNA:   3'- -UGacaGGCU-CGuCGUCGU------------UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 69186 0.66 0.903075
Target:  5'- cGCUGauUCCG-GCAcGCGGCccGCAGCuuGGCc -3'
miRNA:   3'- -UGAC--AGGCuCGU-CGUCGu-UGUCG--CCG- -5'
10699 3' -56.8 NC_002794.1 + 123803 0.66 0.903075
Target:  5'- cGCcGUUCGGgggcGCGGacgAGCAGgAGCGGCg -3'
miRNA:   3'- -UGaCAGGCU----CGUCg--UCGUUgUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 103894 0.66 0.899298
Target:  5'- aGCga--CGAGCAGCGgggcgagaacgccgcGCAAC-GCGGCg -3'
miRNA:   3'- -UGacagGCUCGUCGU---------------CGUUGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 70664 0.66 0.896735
Target:  5'- --cGUgCGcGGCGGCcGCcGCGGCGGUg -3'
miRNA:   3'- ugaCAgGC-UCGUCGuCGuUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 136312 0.66 0.896735
Target:  5'- cACUuUCgGAGCGcccGCAGCucuucuCGGUGGCg -3'
miRNA:   3'- -UGAcAGgCUCGU---CGUCGuu----GUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 21461 0.66 0.896735
Target:  5'- gGCgucgCCGugacGGCAaCGGUGGCAGCGGCu -3'
miRNA:   3'- -UGaca-GGC----UCGUcGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 192145 0.66 0.896735
Target:  5'- uGCUG-CCG-GC-GCGGUcGCGGCGGa -3'
miRNA:   3'- -UGACaGGCuCGuCGUCGuUGUCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.