miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 5' -62.9 NC_002794.1 + 16587 0.66 0.67272
Target:  5'- -cGcCGCCG-CCGuCUCCGgCGUCGcCACc -3'
miRNA:   3'- auCaGCGGCaGGC-GAGGC-GCGGC-GUG- -5'
10699 5' -62.9 NC_002794.1 + 68933 0.66 0.67272
Target:  5'- --cUCGUCGcCCGCgggCCGCGgCGCcgGCg -3'
miRNA:   3'- aucAGCGGCaGGCGa--GGCGCgGCG--UG- -5'
10699 5' -62.9 NC_002794.1 + 192411 0.66 0.67272
Target:  5'- gUAGUCGaaaCG-CCGCgacgggUCCGCGgCCgGCGCg -3'
miRNA:   3'- -AUCAGCg--GCaGGCG------AGGCGC-GG-CGUG- -5'
10699 5' -62.9 NC_002794.1 + 16554 0.66 0.67272
Target:  5'- -cGUCGCCa-CCGCcaccgCCGCcGCCGcCACc -3'
miRNA:   3'- auCAGCGGcaGGCGa----GGCG-CGGC-GUG- -5'
10699 5' -62.9 NC_002794.1 + 49289 0.66 0.67272
Target:  5'- gGG-CGCCG-CCGCcuccCCGUcCCGCACc -3'
miRNA:   3'- aUCaGCGGCaGGCGa---GGCGcGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 90202 0.66 0.67272
Target:  5'- cGGUgcccgCGCC-UCCGCccgCCGCGCCGgAg -3'
miRNA:   3'- aUCA-----GCGGcAGGCGa--GGCGCGGCgUg -5'
10699 5' -62.9 NC_002794.1 + 67836 0.66 0.67272
Target:  5'- cGGccCGCCGU-CGC-CCGgcgcCGCCGCGCg -3'
miRNA:   3'- aUCa-GCGGCAgGCGaGGC----GCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 153384 0.66 0.666944
Target:  5'- gUGGUCGauCUGUCCGaUCgcgagcugucgcgaGCGCCGCGCg -3'
miRNA:   3'- -AUCAGC--GGCAGGCgAGg-------------CGCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 187260 0.66 0.666944
Target:  5'- aAGUC-CUG-CCGCUcgcgcgucucgaacaCCGCGCCGgACg -3'
miRNA:   3'- aUCAGcGGCaGGCGA---------------GGCGCGGCgUG- -5'
10699 5' -62.9 NC_002794.1 + 187842 0.66 0.663089
Target:  5'- cGGcgCGCCGaggGCUCUGCccaGCCGCGCg -3'
miRNA:   3'- aUCa-GCGGCaggCGAGGCG---CGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 195106 0.66 0.663089
Target:  5'- aAGUaCGgCGUCuCGUgcgcCCGCGgCGCGCg -3'
miRNA:   3'- aUCA-GCgGCAG-GCGa---GGCGCgGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 67340 0.66 0.663089
Target:  5'- gGGUgCcCCGgcgCCGCcCCaCGCCGCACa -3'
miRNA:   3'- aUCA-GcGGCa--GGCGaGGcGCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 131288 0.66 0.663089
Target:  5'- cGG-CGCCGU-CGCUCCGcCGcCCGUg- -3'
miRNA:   3'- aUCaGCGGCAgGCGAGGC-GC-GGCGug -5'
10699 5' -62.9 NC_002794.1 + 97688 0.66 0.663089
Target:  5'- cGG-CGCCGUCaaCGCgcccgUCCGCGuuGUGCc -3'
miRNA:   3'- aUCaGCGGCAG--GCG-----AGGCGCggCGUG- -5'
10699 5' -62.9 NC_002794.1 + 135718 0.66 0.662125
Target:  5'- gAGcUGCUGcguagcaUCUGCaccugCCGCGCCGCGCc -3'
miRNA:   3'- aUCaGCGGC-------AGGCGa----GGCGCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 195167 0.66 0.6573
Target:  5'- ---cCGCCGUCCaGCUCUccuugcccgggcacaGCGCCGUc- -3'
miRNA:   3'- aucaGCGGCAGG-CGAGG---------------CGCGGCGug -5'
10699 5' -62.9 NC_002794.1 + 72918 0.66 0.653436
Target:  5'- --cUCGCCG-CCGCcgucggagCCgGCGuCCGCGCg -3'
miRNA:   3'- aucAGCGGCaGGCGa-------GG-CGC-GGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 181768 0.66 0.653436
Target:  5'- ---aCGCCGaUgGCgCCGCGCCGcCGCg -3'
miRNA:   3'- aucaGCGGCaGgCGaGGCGCGGC-GUG- -5'
10699 5' -62.9 NC_002794.1 + 138555 0.66 0.653436
Target:  5'- --uUCGCCuccGcCCGCUCCGuCGUCGCuCg -3'
miRNA:   3'- aucAGCGG---CaGGCGAGGC-GCGGCGuG- -5'
10699 5' -62.9 NC_002794.1 + 44238 0.66 0.653436
Target:  5'- cGGU-GCCGggCgGCUCgGUGCCGgGCg -3'
miRNA:   3'- aUCAgCGGCa-GgCGAGgCGCGGCgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.