miRNA display CGI


Results 1 - 20 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 185171 0.66 0.66042
Target:  5'- cCGCCggCgCGGCgcggucggcgcggucGGCGCggucaucgCGGCUCGCGCCg -3'
miRNA:   3'- -GCGGa-G-GUCG---------------UCGUG--------GUCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 52168 0.66 0.656577
Target:  5'- aGgCggCGGCGGUGCgCAucGCCUGCGCCa -3'
miRNA:   3'- gCgGagGUCGUCGUG-GU--CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 32574 0.66 0.656577
Target:  5'- aGUCgcgCgCGGCGGUGCCggGGCCgGgGCCg -3'
miRNA:   3'- gCGGa--G-GUCGUCGUGG--UCGGgCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 43822 0.66 0.656577
Target:  5'- gGCuCUCCAGCgaguGGCACaccuccucaCAGuCCCGCucgGCCc -3'
miRNA:   3'- gCG-GAGGUCG----UCGUG---------GUC-GGGCG---CGG- -5'
10700 3' -63.4 NC_002794.1 + 70031 0.66 0.656577
Target:  5'- aGCCcgUUCAGCAGCAgCAcguaggucGCCCG-GUCg -3'
miRNA:   3'- gCGG--AGGUCGUCGUgGU--------CGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 51074 0.66 0.656577
Target:  5'- gCGaCCUCCgAGCGuggcGCGCuCGGaaaagacgaCCGCGCCu -3'
miRNA:   3'- -GC-GGAGG-UCGU----CGUG-GUCg--------GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 48167 0.66 0.656577
Target:  5'- gCGCCgcUUCAcGCcGCugCAGCggaaCUGCGCCa -3'
miRNA:   3'- -GCGG--AGGU-CGuCGugGUCG----GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 61736 0.66 0.656577
Target:  5'- cCGCC-CC-GCGGa---AGCCCGCGCg -3'
miRNA:   3'- -GCGGaGGuCGUCguggUCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 111742 0.66 0.656577
Target:  5'- gCGCUcgUCgAGCuGGCGCC-GCgCgGCGCCg -3'
miRNA:   3'- -GCGG--AGgUCG-UCGUGGuCG-GgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 190852 0.66 0.656577
Target:  5'- aCGaUCUCCAGCGGgucguacacguaCAcCCGGCugCCGUGCCc -3'
miRNA:   3'- -GC-GGAGGUCGUC------------GU-GGUCG--GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 156203 0.66 0.656577
Target:  5'- uCGCCggucggagggCCGGCGacucCGCCGGCggcuCCGCGCUc -3'
miRNA:   3'- -GCGGa---------GGUCGUc---GUGGUCG----GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 49715 0.66 0.653693
Target:  5'- uCGCCcCgGGCAGUcgaGCCagaccgugguggcgAGCCCGUagGCCg -3'
miRNA:   3'- -GCGGaGgUCGUCG---UGG--------------UCGGGCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 67762 0.66 0.646959
Target:  5'- aCGgCUCgCGGCAaCGCCAGCUCGgacucgGCCg -3'
miRNA:   3'- -GCgGAG-GUCGUcGUGGUCGGGCg-----CGG- -5'
10700 3' -63.4 NC_002794.1 + 41806 0.66 0.646959
Target:  5'- aGCagacgUCCAGCgaGGCGCCcagcaGGCCCGUGgUCg -3'
miRNA:   3'- gCGg----AGGUCG--UCGUGG-----UCGGGCGC-GG- -5'
10700 3' -63.4 NC_002794.1 + 11644 0.66 0.646959
Target:  5'- aGCgaCgGGCGGCcgacgACgCGGCCCGCcgGCCa -3'
miRNA:   3'- gCGgaGgUCGUCG-----UG-GUCGGGCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 180577 0.66 0.646959
Target:  5'- gGCCcaguugUCCcacGGCAGCAgCuGuCCuCGCGCCg -3'
miRNA:   3'- gCGG------AGG---UCGUCGUgGuC-GG-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 79079 0.66 0.646959
Target:  5'- gCGCuCUCCccucGCGcuccCGCCcGCCCGCGCg -3'
miRNA:   3'- -GCG-GAGGu---CGUc---GUGGuCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 84977 0.66 0.646959
Target:  5'- gGCC-CCGGCcGCgaaaccccACgAGCCCGacCGCCg -3'
miRNA:   3'- gCGGaGGUCGuCG--------UGgUCGGGC--GCGG- -5'
10700 3' -63.4 NC_002794.1 + 64986 0.66 0.646959
Target:  5'- cCGCC-CCAGCugcacuggcGGCAguggaaccUCAGCCUGuCGCUa -3'
miRNA:   3'- -GCGGaGGUCG---------UCGU--------GGUCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 126370 0.66 0.646959
Target:  5'- uCGCCg-CuGCgugGGCGCCggGGCCUGCGCg -3'
miRNA:   3'- -GCGGagGuCG---UCGUGG--UCGGGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.