miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 181221 0.66 0.979438
Target:  5'- --aAGCaGCGACGAGauccGgcGA-CGGCGCg -3'
miRNA:   3'- uucUCG-CGCUGCUU----CuuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 14610 0.66 0.979438
Target:  5'- -cGGGCaccGCGACGggGccgGAGA-CGGgGCc -3'
miRNA:   3'- uuCUCG---CGCUGCuuC---UUCUaGCCgCG- -5'
10701 3' -53.9 NC_002794.1 + 71321 0.66 0.979438
Target:  5'- -cGAGCGCGccaccucgGCGgcGAugucguccgccAGG-CGGCGCa -3'
miRNA:   3'- uuCUCGCGC--------UGCuuCU-----------UCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 120125 0.66 0.979438
Target:  5'- ---cGCGCGACGgcGAccggggacGGGcCGGUGCc -3'
miRNA:   3'- uucuCGCGCUGCuuCU--------UCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 84284 0.66 0.979438
Target:  5'- --cAGCuGcCGACGggGAGcGG-CGGCGCu -3'
miRNA:   3'- uucUCG-C-GCUGCuuCUU-CUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 125448 0.66 0.979438
Target:  5'- cAAGGGCGaCGGCGgcGAGca-CGGcCGCg -3'
miRNA:   3'- -UUCUCGC-GCUGCuuCUUcuaGCC-GCG- -5'
10701 3' -53.9 NC_002794.1 + 20030 0.66 0.979438
Target:  5'- cGAGAGCGCGGucCGGAucgcgcucGAccAGAUC-GCGCu -3'
miRNA:   3'- -UUCUCGCGCU--GCUU--------CU--UCUAGcCGCG- -5'
10701 3' -53.9 NC_002794.1 + 44362 0.66 0.979438
Target:  5'- cGAGAGCGCGGCG---------GGCGCg -3'
miRNA:   3'- -UUCUCGCGCUGCuucuucuagCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 105886 0.66 0.978534
Target:  5'- --uGGgGgGugGGAGAGGAgucgccgcggcggCGGCGCu -3'
miRNA:   3'- uucUCgCgCugCUUCUUCUa------------GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 121581 0.66 0.977123
Target:  5'- --cAGCGUGACGGGcgcGggGucguUCGGCGa -3'
miRNA:   3'- uucUCGCGCUGCUU---CuuCu---AGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 140554 0.66 0.976393
Target:  5'- cGAGGGaCGCGACGAccugcGGugucAGAauccguucgcccugUCGGUGCu -3'
miRNA:   3'- -UUCUC-GCGCUGCU-----UCu---UCU--------------AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 101687 0.66 0.975645
Target:  5'- cGGAGCGCGAgcccgagccggcgccCGAGGAcGuguucgUGGUGCa -3'
miRNA:   3'- uUCUCGCGCU---------------GCUUCUuCua----GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 142765 0.66 0.974622
Target:  5'- --uGGUGUGACgGAAGAcGAUCucguacGGCGCg -3'
miRNA:   3'- uucUCGCGCUG-CUUCUuCUAG------CCGCG- -5'
10701 3' -53.9 NC_002794.1 + 43164 0.66 0.974622
Target:  5'- cAGAGCuCGGCGAcGGAAuagcGGUUGcGCGCg -3'
miRNA:   3'- uUCUCGcGCUGCU-UCUU----CUAGC-CGCG- -5'
10701 3' -53.9 NC_002794.1 + 55318 0.66 0.974622
Target:  5'- -cGGGCGCGGgcggcuucCGAGGAcccgGGGUC-GCGCc -3'
miRNA:   3'- uuCUCGCGCU--------GCUUCU----UCUAGcCGCG- -5'
10701 3' -53.9 NC_002794.1 + 140240 0.66 0.974622
Target:  5'- aGAGAGCGgGGaaaGAAGggGAaagaaggagagcUCGcCGCg -3'
miRNA:   3'- -UUCUCGCgCUg--CUUCuuCU------------AGCcGCG- -5'
10701 3' -53.9 NC_002794.1 + 2476 0.66 0.971928
Target:  5'- --aAGCGCG-CGAGGgcGAUcCGGUGg -3'
miRNA:   3'- uucUCGCGCuGCUUCuuCUA-GCCGCg -5'
10701 3' -53.9 NC_002794.1 + 107630 0.66 0.971928
Target:  5'- --uGGCgGUGACGAAGAGGA---GCGCg -3'
miRNA:   3'- uucUCG-CGCUGCUUCUUCUagcCGCG- -5'
10701 3' -53.9 NC_002794.1 + 92549 0.66 0.971928
Target:  5'- ----cCGCGACGAGGu-GGcCGGCGCc -3'
miRNA:   3'- uucucGCGCUGCUUCuuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 66514 0.66 0.969924
Target:  5'- -cGAGCGauaGGCcguccccggguccgcGAAGGUCGGCGCc -3'
miRNA:   3'- uuCUCGCg--CUGcuu------------CUUCUAGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.