miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 5' -57.6 NC_002794.1 + 38499 0.66 0.926019
Target:  5'- gCGGCGGCGcCGGUcgcCGC-CGcCUCcgCGa -3'
miRNA:   3'- -GCUGCCGC-GCCAa--GCGaGCaGAGa-GC- -5'
10701 5' -57.6 NC_002794.1 + 95234 0.66 0.926019
Target:  5'- aGACGGU-UGGUUCGCggcccCGUUUgUCGa -3'
miRNA:   3'- gCUGCCGcGCCAAGCGa----GCAGAgAGC- -5'
10701 5' -57.6 NC_002794.1 + 67960 0.66 0.920783
Target:  5'- gGACGGCGggcccagaCGGgUCGgUCGcUUCUCGa -3'
miRNA:   3'- gCUGCCGC--------GCCaAGCgAGCaGAGAGC- -5'
10701 5' -57.6 NC_002794.1 + 30990 0.66 0.920783
Target:  5'- gCGACGGCGgGGUcuUCGCcggaCGUCgccgccgcCUCc -3'
miRNA:   3'- -GCUGCCGCgCCA--AGCGa---GCAGa-------GAGc -5'
10701 5' -57.6 NC_002794.1 + 61896 0.66 0.920247
Target:  5'- gCGGCGaGCGCGGcgagCGCagcgacgUCGUCaccCUCGa -3'
miRNA:   3'- -GCUGC-CGCGCCaa--GCG-------AGCAGa--GAGC- -5'
10701 5' -57.6 NC_002794.1 + 151736 0.66 0.915327
Target:  5'- uCGuCGGcCGcCGGUcgccucgcgCGCUCGUC-CUCGa -3'
miRNA:   3'- -GCuGCC-GC-GCCAa--------GCGAGCAGaGAGC- -5'
10701 5' -57.6 NC_002794.1 + 127613 0.66 0.915327
Target:  5'- -aGCGGCGCGGacCGgaCUCGUCg-UCGa -3'
miRNA:   3'- gcUGCCGCGCCaaGC--GAGCAGagAGC- -5'
10701 5' -57.6 NC_002794.1 + 65272 0.66 0.909654
Target:  5'- gCGGCGGCGCcuccUCGCcccccucggcgUCGUC-CUCGa -3'
miRNA:   3'- -GCUGCCGCGcca-AGCG-----------AGCAGaGAGC- -5'
10701 5' -57.6 NC_002794.1 + 120441 0.66 0.909654
Target:  5'- aGcCGGCGUGGaaCGCcgCGUCggccuggCUCGa -3'
miRNA:   3'- gCuGCCGCGCCaaGCGa-GCAGa------GAGC- -5'
10701 5' -57.6 NC_002794.1 + 18703 0.66 0.909654
Target:  5'- aCGGCGGCgGCGGUcCGgaCGUCggagC-CGa -3'
miRNA:   3'- -GCUGCCG-CGCCAaGCgaGCAGa---GaGC- -5'
10701 5' -57.6 NC_002794.1 + 138709 0.67 0.897663
Target:  5'- gGGCGGCGUGGacUCGCgUCGagccggCUCGa -3'
miRNA:   3'- gCUGCCGCGCCa-AGCG-AGCaga---GAGC- -5'
10701 5' -57.6 NC_002794.1 + 193282 0.67 0.891349
Target:  5'- gCGGCGuGCGcCGGUagUCGC-CGUCcgCUCc -3'
miRNA:   3'- -GCUGC-CGC-GCCA--AGCGaGCAGa-GAGc -5'
10701 5' -57.6 NC_002794.1 + 119443 0.67 0.878099
Target:  5'- aCGGCGGCgGCGGUg-GCggCGUCgacUUCGa -3'
miRNA:   3'- -GCUGCCG-CGCCAagCGa-GCAGa--GAGC- -5'
10701 5' -57.6 NC_002794.1 + 620 0.67 0.864047
Target:  5'- aGGCGGCcCGGUguggCGUUCGcCUCcCGu -3'
miRNA:   3'- gCUGCCGcGCCAa---GCGAGCaGAGaGC- -5'
10701 5' -57.6 NC_002794.1 + 99600 0.67 0.864047
Target:  5'- gCGGCGGCGCG---CGCUCG-CgccgcCUCGg -3'
miRNA:   3'- -GCUGCCGCGCcaaGCGAGCaGa----GAGC- -5'
10701 5' -57.6 NC_002794.1 + 132500 0.67 0.864047
Target:  5'- aCGAUGGCGUGGcggcaUCGCUgGaC-CUCGg -3'
miRNA:   3'- -GCUGCCGCGCCa----AGCGAgCaGaGAGC- -5'
10701 5' -57.6 NC_002794.1 + 176209 0.68 0.856731
Target:  5'- uGGCGGauggaaGGcUCGCUCGUCUCgccCGg -3'
miRNA:   3'- gCUGCCgcg---CCaAGCGAGCAGAGa--GC- -5'
10701 5' -57.6 NC_002794.1 + 118292 0.68 0.84923
Target:  5'- gGACcGCGcCGGgcgcgUCGCUCGUCgUCgUCGu -3'
miRNA:   3'- gCUGcCGC-GCCa----AGCGAGCAG-AG-AGC- -5'
10701 5' -57.6 NC_002794.1 + 96421 0.68 0.841548
Target:  5'- uCGAucuCGGCGCGG--CGCUCGaUCUCa-- -3'
miRNA:   3'- -GCU---GCCGCGCCaaGCGAGC-AGAGagc -5'
10701 5' -57.6 NC_002794.1 + 14702 0.68 0.841548
Target:  5'- uGACGGCGUGGggagcgcUGCUCGcggcuUCggCUCGg -3'
miRNA:   3'- gCUGCCGCGCCaa-----GCGAGC-----AGa-GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.