miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10702 5' -61.9 NC_002794.1 + 58834 0.66 0.742256
Target:  5'- -cCuGCCGCgCGAGGACgccgaCGUGcAGCUCg -3'
miRNA:   3'- gaGcCGGCGaGCUCCUG-----GCGC-UCGAG- -5'
10702 5' -61.9 NC_002794.1 + 189456 0.66 0.742256
Target:  5'- gUCGGCCaGCacgCGccgaaAGG-CCGCGGGCgUCg -3'
miRNA:   3'- gAGCCGG-CGa--GC-----UCCuGGCGCUCG-AG- -5'
10702 5' -61.9 NC_002794.1 + 185480 0.66 0.742256
Target:  5'- -gCGGCCGCggcgaGGGGACCGCcuauauauucGAuCUCc -3'
miRNA:   3'- gaGCCGGCGag---CUCCUGGCG----------CUcGAG- -5'
10702 5' -61.9 NC_002794.1 + 187472 0.66 0.742256
Target:  5'- gCUCGGCgCGCgccgggcCGAGGacgagGCCGCGcaGGCg- -3'
miRNA:   3'- -GAGCCG-GCGa------GCUCC-----UGGCGC--UCGag -5'
10702 5' -61.9 NC_002794.1 + 16712 0.66 0.742256
Target:  5'- gCUC-GCCGUcCGAGGAguCUGCGccGGCUCc -3'
miRNA:   3'- -GAGcCGGCGaGCUCCU--GGCGC--UCGAG- -5'
10702 5' -61.9 NC_002794.1 + 94049 0.66 0.742256
Target:  5'- -gCGGCgGCggugCGGGGGCgGCGGGg-- -3'
miRNA:   3'- gaGCCGgCGa---GCUCCUGgCGCUCgag -5'
10702 5' -61.9 NC_002794.1 + 37776 0.66 0.733034
Target:  5'- -gCGGCCGUcgUCGucGGCCGCaGGCg- -3'
miRNA:   3'- gaGCCGGCG--AGCucCUGGCGcUCGag -5'
10702 5' -61.9 NC_002794.1 + 183174 0.66 0.733034
Target:  5'- -cCGaGCCGgUCGGGGACCGaGAcGCg- -3'
miRNA:   3'- gaGC-CGGCgAGCUCCUGGCgCU-CGag -5'
10702 5' -61.9 NC_002794.1 + 87025 0.66 0.733034
Target:  5'- --gGGuCCGCaggaucCGGGGACCGgCGcGGCUCg -3'
miRNA:   3'- gagCC-GGCGa-----GCUCCUGGC-GC-UCGAG- -5'
10702 5' -61.9 NC_002794.1 + 80902 0.66 0.733034
Target:  5'- -gCGGCC-CUCGAcGAcCCGCGcccGCUCg -3'
miRNA:   3'- gaGCCGGcGAGCUcCU-GGCGCu--CGAG- -5'
10702 5' -61.9 NC_002794.1 + 84981 0.66 0.733034
Target:  5'- -cCGGCCGCgaaaccccaCGAGcccGACCGcCGcGCUCg -3'
miRNA:   3'- gaGCCGGCGa--------GCUC---CUGGC-GCuCGAG- -5'
10702 5' -61.9 NC_002794.1 + 85934 0.66 0.727463
Target:  5'- gUUGGCCggGCUCGgaaccgacccggaacGGGGCCGCGGcccuCUCa -3'
miRNA:   3'- gAGCCGG--CGAGC---------------UCCUGGCGCUc---GAG- -5'
10702 5' -61.9 NC_002794.1 + 591 0.66 0.723734
Target:  5'- cCUCGGuCCGUUCGuGG-CCGgGuGCg- -3'
miRNA:   3'- -GAGCC-GGCGAGCuCCuGGCgCuCGag -5'
10702 5' -61.9 NC_002794.1 + 115952 0.66 0.723734
Target:  5'- -gCGuGUCGC-CGGGGACCGUGGGg-- -3'
miRNA:   3'- gaGC-CGGCGaGCUCCUGGCGCUCgag -5'
10702 5' -61.9 NC_002794.1 + 59291 0.66 0.723734
Target:  5'- gCUC-GCCGCUCGAc-GCCGCGcAGCg- -3'
miRNA:   3'- -GAGcCGGCGAGCUccUGGCGC-UCGag -5'
10702 5' -61.9 NC_002794.1 + 147053 0.66 0.723734
Target:  5'- -gCGGCCGgUCuaagGAcGGAgCCGCGGGCg- -3'
miRNA:   3'- gaGCCGGCgAG----CU-CCU-GGCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 122758 0.66 0.714363
Target:  5'- cCUCGaGCUGaUCGAGcgcuCCGCGAGCg- -3'
miRNA:   3'- -GAGC-CGGCgAGCUCcu--GGCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 42604 0.66 0.714363
Target:  5'- -gCGGCCGggagcgggcucuCUCGAcGACCGCGcuCUCa -3'
miRNA:   3'- gaGCCGGC------------GAGCUcCUGGCGCucGAG- -5'
10702 5' -61.9 NC_002794.1 + 107410 0.66 0.711539
Target:  5'- cCUCGGCgGCUauguccUGGGcucugcggcgccucGugCGUGAGCUCa -3'
miRNA:   3'- -GAGCCGgCGA------GCUC--------------CugGCGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 115809 0.66 0.711539
Target:  5'- gUCGGCagaaGCUCuuccgccuggaucgGcGGGGCCcgGCGGGCUCg -3'
miRNA:   3'- gAGCCGg---CGAG--------------C-UCCUGG--CGCUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.