miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10703 3' -61.4 NC_002794.1 + 148134 0.66 0.734348
Target:  5'- --gGCgCGGGGcCGCCgGGGCgaGGGCg -3'
miRNA:   3'- caaCGgGCCCC-GCGGgUCUGagUCUG- -5'
10703 3' -61.4 NC_002794.1 + 85020 0.66 0.734348
Target:  5'- -gUGCCCcGGGCccacGCUCGGGugcCUCGGGCc -3'
miRNA:   3'- caACGGGcCCCG----CGGGUCU---GAGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 44214 0.66 0.724923
Target:  5'- --cGUCCGGcucgGGCGCCgaGGGCUCGGuGCc -3'
miRNA:   3'- caaCGGGCC----CCGCGGg-UCUGAGUC-UG- -5'
10703 3' -61.4 NC_002794.1 + 44498 0.66 0.724923
Target:  5'- cGUUGUCUcacGGCgGCCCAGAC-CGGGCc -3'
miRNA:   3'- -CAACGGGcc-CCG-CGGGUCUGaGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 19527 0.66 0.724923
Target:  5'- --aGCgCCGGcgcGGCGCggcccgCCGGugUCGGACc -3'
miRNA:   3'- caaCG-GGCC---CCGCG------GGUCugAGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 37335 0.66 0.722081
Target:  5'- uGggGCCCGggcggcagcaggucGGGC-CCCAGguagucgaaGCUCGGGCg -3'
miRNA:   3'- -CaaCGGGC--------------CCCGcGGGUC---------UGAGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 17966 0.66 0.715424
Target:  5'- --cGCCCGGgccgugagccuGGCGCCCAcGGCcgCcGGCg -3'
miRNA:   3'- caaCGGGCC-----------CCGCGGGU-CUGa-GuCUG- -5'
10703 3' -61.4 NC_002794.1 + 141790 0.66 0.715424
Target:  5'- --cGUCCGacGGGCGCgggUCGGcCUCGGACa -3'
miRNA:   3'- caaCGGGC--CCCGCG---GGUCuGAGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 183728 0.66 0.705861
Target:  5'- --aGCCCGcacGCGCCCAGcaggaUCAGGCc -3'
miRNA:   3'- caaCGGGCcc-CGCGGGUCug---AGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 140200 0.66 0.69624
Target:  5'- --cGUCgaGGGGCGaCCCGGGC-CGGAg -3'
miRNA:   3'- caaCGGg-CCCCGC-GGGUCUGaGUCUg -5'
10703 3' -61.4 NC_002794.1 + 180698 0.67 0.676858
Target:  5'- --cGCCCGgcGGGCGgaCCAuGGCUCGGGu -3'
miRNA:   3'- caaCGGGC--CCCGCg-GGU-CUGAGUCUg -5'
10703 3' -61.4 NC_002794.1 + 113652 0.67 0.675885
Target:  5'- --gGCCCGGcguccucGGCGUCCAGcgcgGCgagCAGGCc -3'
miRNA:   3'- caaCGGGCC-------CCGCGGGUC----UGa--GUCUG- -5'
10703 3' -61.4 NC_002794.1 + 129331 0.67 0.667113
Target:  5'- --cGCCCGGGGCGgcgguuUCCAGAa-CGGGg -3'
miRNA:   3'- caaCGGGCCCCGC------GGGUCUgaGUCUg -5'
10703 3' -61.4 NC_002794.1 + 188946 0.67 0.657342
Target:  5'- -cUGUCCGGGcGUGCgCAGGUUCAGGu -3'
miRNA:   3'- caACGGGCCC-CGCGgGUCUGAGUCUg -5'
10703 3' -61.4 NC_002794.1 + 86563 0.67 0.647553
Target:  5'- -aUGCuCCGGGccGCGCCC-GAC-CGGAUu -3'
miRNA:   3'- caACG-GGCCC--CGCGGGuCUGaGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 82188 0.67 0.637752
Target:  5'- --aGCCCGGGcgccccgaGCGCCCGGcACUCc--- -3'
miRNA:   3'- caaCGGGCCC--------CGCGGGUC-UGAGucug -5'
10703 3' -61.4 NC_002794.1 + 195123 0.67 0.627947
Target:  5'- --cGCCCGcGGcGCGCgCGGGCUCgcguacaccaccGGACc -3'
miRNA:   3'- caaCGGGC-CC-CGCGgGUCUGAG------------UCUG- -5'
10703 3' -61.4 NC_002794.1 + 182013 0.67 0.627947
Target:  5'- --aGCCCGGgaccccGGCGUCCGGGCcgCcGGCg -3'
miRNA:   3'- caaCGGGCC------CCGCGGGUCUGa-GuCUG- -5'
10703 3' -61.4 NC_002794.1 + 86515 0.68 0.588824
Target:  5'- -aUGCuCCGGGccGCGCCC-GAC-CGGAUg -3'
miRNA:   3'- caACG-GGCCC--CGCGGGuCUGaGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 86395 0.68 0.588824
Target:  5'- -aUGCuCCGGGccGCGCCC-GAC-CGGAUg -3'
miRNA:   3'- caACG-GGCCC--CGCGGGuCUGaGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.