miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10703 5' -54 NC_002794.1 + 183411 0.66 0.984806
Target:  5'- -aGCCaCGGgaCCAGAaGCGgGAGCGGGa -3'
miRNA:   3'- ggCGG-GCCa-GGUCUaUGCaCUUGUCU- -5'
10703 5' -54 NC_002794.1 + 33079 0.66 0.984277
Target:  5'- aCGCUCGaauucuUCCAGAUccuccacggcgugaACGUGAGCGGc -3'
miRNA:   3'- gGCGGGCc-----AGGUCUA--------------UGCACUUGUCu -5'
10703 5' -54 NC_002794.1 + 88460 0.66 0.982988
Target:  5'- aUGCCUGGUCCgcAGAUAcCGUugGAGCGu- -3'
miRNA:   3'- gGCGGGCCAGG--UCUAU-GCA--CUUGUcu -5'
10703 5' -54 NC_002794.1 + 35657 0.66 0.982988
Target:  5'- gCGCCCGGUCUccg-ACGUGGuCAa- -3'
miRNA:   3'- gGCGGGCCAGGucuaUGCACUuGUcu -5'
10703 5' -54 NC_002794.1 + 30394 0.66 0.98101
Target:  5'- gCCGCCCGcGaCguGAUGcCGUGGucgaacgucguGCAGAu -3'
miRNA:   3'- -GGCGGGC-CaGguCUAU-GCACU-----------UGUCU- -5'
10703 5' -54 NC_002794.1 + 138452 0.66 0.978865
Target:  5'- gCGCCuCGG-CCuGcgACGUGGACGuGAc -3'
miRNA:   3'- gGCGG-GCCaGGuCuaUGCACUUGU-CU- -5'
10703 5' -54 NC_002794.1 + 91978 0.66 0.978865
Target:  5'- aCCGCCUGG-CCAucUACaacacgGGGCAGAa -3'
miRNA:   3'- -GGCGGGCCaGGUcuAUGca----CUUGUCU- -5'
10703 5' -54 NC_002794.1 + 115611 0.66 0.978865
Target:  5'- cUCGCCCGGcgCCGGGagGCG-GGuCAGGu -3'
miRNA:   3'- -GGCGGGCCa-GGUCUa-UGCaCUuGUCU- -5'
10703 5' -54 NC_002794.1 + 147080 0.66 0.976545
Target:  5'- gCGCCCGGUCCaaGGAcgaagGCGUcGGCGc- -3'
miRNA:   3'- gGCGGGCCAGG--UCUa----UGCAcUUGUcu -5'
10703 5' -54 NC_002794.1 + 88776 0.67 0.974044
Target:  5'- gUCGCCgGuGUaaUCGGAU-CGUGAACGGGc -3'
miRNA:   3'- -GGCGGgC-CA--GGUCUAuGCACUUGUCU- -5'
10703 5' -54 NC_002794.1 + 12204 0.67 0.974044
Target:  5'- gCCGCUCGGacgugCCGGcgGCGUcGGCGGc -3'
miRNA:   3'- -GGCGGGCCa----GGUCuaUGCAcUUGUCu -5'
10703 5' -54 NC_002794.1 + 111320 0.67 0.974044
Target:  5'- aCGCCgGG-CCAGcgGCGcgGGccGCAGAu -3'
miRNA:   3'- gGCGGgCCaGGUCuaUGCa-CU--UGUCU- -5'
10703 5' -54 NC_002794.1 + 128331 0.67 0.971355
Target:  5'- cCCGCCCGGaCgCGGuggAC-UGAGCAGu -3'
miRNA:   3'- -GGCGGGCCaG-GUCua-UGcACUUGUCu -5'
10703 5' -54 NC_002794.1 + 47740 0.67 0.971355
Target:  5'- cCCGCCgGGUCCAcGUGgcggcCGUGGucGCGGc -3'
miRNA:   3'- -GGCGGgCCAGGUcUAU-----GCACU--UGUCu -5'
10703 5' -54 NC_002794.1 + 133934 0.67 0.971355
Target:  5'- gCGCCC-GUCCAGuUGCGgggUGAcCGGAa -3'
miRNA:   3'- gGCGGGcCAGGUCuAUGC---ACUuGUCU- -5'
10703 5' -54 NC_002794.1 + 192998 0.67 0.971355
Target:  5'- cUCGCCCGGcgugugcagcgCCAGcgGCGUGuACAu- -3'
miRNA:   3'- -GGCGGGCCa----------GGUCuaUGCACuUGUcu -5'
10703 5' -54 NC_002794.1 + 45943 0.67 0.971355
Target:  5'- cCCGCCCGGUgaccgucucUCGGGcGCGUGAu---- -3'
miRNA:   3'- -GGCGGGCCA---------GGUCUaUGCACUugucu -5'
10703 5' -54 NC_002794.1 + 44453 0.67 0.969648
Target:  5'- cCCGCCCGGacgUCGGcgGCG-GAgaccgccccgucgaaACAGAg -3'
miRNA:   3'- -GGCGGGCCa--GGUCuaUGCaCU---------------UGUCU- -5'
10703 5' -54 NC_002794.1 + 104268 0.67 0.968471
Target:  5'- gCCGCUCGG-CCGGcacCGUgccGAACAGGa -3'
miRNA:   3'- -GGCGGGCCaGGUCuauGCA---CUUGUCU- -5'
10703 5' -54 NC_002794.1 + 154163 0.67 0.968471
Target:  5'- uUCGCgCGGggCAGAacUACGUGAuCAGGg -3'
miRNA:   3'- -GGCGgGCCagGUCU--AUGCACUuGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.