miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 3' -60.1 NC_002794.1 + 83894 0.66 0.807064
Target:  5'- -gGCuCGGCGCCCgACgAGcCCGgCAc -3'
miRNA:   3'- caUGuGCCGCGGGgUGgUCaGGUgGU- -5'
10704 3' -60.1 NC_002794.1 + 17208 0.66 0.807064
Target:  5'- -gACACcGcCGCCgCCACCAccgCCGCCAc -3'
miRNA:   3'- caUGUGcC-GCGG-GGUGGUca-GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 74011 0.66 0.807064
Target:  5'- -cACGCuGCGCCUguUCGG-CCGCCAc -3'
miRNA:   3'- caUGUGcCGCGGGguGGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 182371 0.66 0.807064
Target:  5'- -cGCACG--GCCCC-CCGGUCCcCCGc -3'
miRNA:   3'- caUGUGCcgCGGGGuGGUCAGGuGGU- -5'
10704 3' -60.1 NC_002794.1 + 49260 0.66 0.807064
Target:  5'- -cGCACccacgacgGGCGCUCCAacggcCCGGgcgCCGCCGc -3'
miRNA:   3'- caUGUG--------CCGCGGGGU-----GGUCa--GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 59885 0.66 0.807064
Target:  5'- cUGCACGGCGCaCCUgcGCCGcGUgCGCa- -3'
miRNA:   3'- cAUGUGCCGCG-GGG--UGGU-CAgGUGgu -5'
10704 3' -60.1 NC_002794.1 + 195119 0.66 0.801944
Target:  5'- cGUGCgcccGCGGCGCgCgcgggcucgcguacaCCACCGGacCCACCAc -3'
miRNA:   3'- -CAUG----UGCCGCG-G---------------GGUGGUCa-GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 24034 0.66 0.798501
Target:  5'- -gGCgACGGCgGUCCCucCCcGUCCGCCc -3'
miRNA:   3'- caUG-UGCCG-CGGGGu-GGuCAGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 85467 0.66 0.798501
Target:  5'- -gGC-CGGCGCCCgGCCuccggccugucGUCUGCCu -3'
miRNA:   3'- caUGuGCCGCGGGgUGGu----------CAGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 116891 0.66 0.798501
Target:  5'- -gGCGcCGGCGCCgUcuccggcgGCCGGUCCGgCGu -3'
miRNA:   3'- caUGU-GCCGCGGgG--------UGGUCAGGUgGU- -5'
10704 3' -60.1 NC_002794.1 + 68239 0.66 0.798501
Target:  5'- -gACGCaGCGCCCCgACCucccccUCCugCAg -3'
miRNA:   3'- caUGUGcCGCGGGG-UGGuc----AGGugGU- -5'
10704 3' -60.1 NC_002794.1 + 185767 0.66 0.798501
Target:  5'- -gGCGCGGcCGCCCguCaCAcGUCgGCCGg -3'
miRNA:   3'- caUGUGCC-GCGGGguG-GU-CAGgUGGU- -5'
10704 3' -60.1 NC_002794.1 + 182469 0.66 0.798501
Target:  5'- gGUGCGCGGCGUCagCAgauaCAGUCCcaagggGCCGg -3'
miRNA:   3'- -CAUGUGCCGCGGg-GUg---GUCAGG------UGGU- -5'
10704 3' -60.1 NC_002794.1 + 188781 0.66 0.797637
Target:  5'- gGUGCagcgguaGCGGCcgGCCCCGCCgAGcgCCGuCCAg -3'
miRNA:   3'- -CAUG-------UGCCG--CGGGGUGG-UCa-GGU-GGU- -5'
10704 3' -60.1 NC_002794.1 + 71316 0.66 0.793297
Target:  5'- -gGCgGCGaGCGCgCCACCucggcggcgaugucGUCCGCCAg -3'
miRNA:   3'- caUG-UGC-CGCGgGGUGGu-------------CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 18274 0.66 0.7898
Target:  5'- aUGCGCGGCGCCgaGCCuucgaaccgAG-CCGCCc -3'
miRNA:   3'- cAUGUGCCGCGGggUGG---------UCaGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 60637 0.66 0.7898
Target:  5'- -gACcCGGCGCCggcggCGCCGG-CCACCc -3'
miRNA:   3'- caUGuGCCGCGGg----GUGGUCaGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 60808 0.66 0.7898
Target:  5'- ---gACGGCGCCcgacaCCACCGuGUUCugCAc -3'
miRNA:   3'- caugUGCCGCGG-----GGUGGU-CAGGugGU- -5'
10704 3' -60.1 NC_002794.1 + 107259 0.66 0.780967
Target:  5'- -gGCcCGGCggaGCCgCGCC-GUCCGCCGc -3'
miRNA:   3'- caUGuGCCG---CGGgGUGGuCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 78371 0.66 0.780967
Target:  5'- -aACACGGCcuGCUCCGCCAG-CgACg- -3'
miRNA:   3'- caUGUGCCG--CGGGGUGGUCaGgUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.