miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10705 5' -53.2 NC_002794.1 + 164228 0.66 0.992355
Target:  5'- aGGUaccAGAAGUUuccguauuggucgggUGUGUUGGAGCgauagcguuaGCCGGu -3'
miRNA:   3'- -CCA---UCUUCAG---------------GCACAGCUUCG----------CGGCC- -5'
10705 5' -53.2 NC_002794.1 + 128938 0.66 0.991939
Target:  5'- ---cGAAcGUCCG-GUgGAGccuGCGCCGGa -3'
miRNA:   3'- ccauCUU-CAGGCaCAgCUU---CGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 2255 0.66 0.991939
Target:  5'- --aGGAAGUCCGaggCGAc-CGCCGGc -3'
miRNA:   3'- ccaUCUUCAGGCacaGCUucGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 53678 0.66 0.990819
Target:  5'- --cGGAuccGUCCGUcaaaCGGAGCGCCGc -3'
miRNA:   3'- ccaUCUu--CAGGCAca--GCUUCGCGGCc -5'
10705 5' -53.2 NC_002794.1 + 158702 0.66 0.990701
Target:  5'- -aUGGggGUCCGUGggaugagggucUCGAgauguucgaagacGGC-CCGGg -3'
miRNA:   3'- ccAUCuuCAGGCAC-----------AGCU-------------UCGcGGCC- -5'
10705 5' -53.2 NC_002794.1 + 47648 0.66 0.990461
Target:  5'- cGUGGucGUCCcgaacgaucggacaGUgGUCGAAGCGacaCGGg -3'
miRNA:   3'- cCAUCuuCAGG--------------CA-CAGCUUCGCg--GCC- -5'
10705 5' -53.2 NC_002794.1 + 18707 0.66 0.989581
Target:  5'- cGGcGGcGGUCCGgacGUCGGAGCcgacgaGCCGc -3'
miRNA:   3'- -CCaUCuUCAGGCa--CAGCUUCG------CGGCc -5'
10705 5' -53.2 NC_002794.1 + 142400 0.66 0.988215
Target:  5'- cGGUGcAGG-CgGcGUCGGcGGCGCCGGg -3'
miRNA:   3'- -CCAUcUUCaGgCaCAGCU-UCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 137457 0.66 0.98778
Target:  5'- cGGcGGAAuccgCCGUGUCGGcggccucguagagcAGCGCCa- -3'
miRNA:   3'- -CCaUCUUca--GGCACAGCU--------------UCGCGGcc -5'
10705 5' -53.2 NC_002794.1 + 1076 0.67 0.985072
Target:  5'- --cGGggGUUCGUuUCGggGCGUCc- -3'
miRNA:   3'- ccaUCuuCAGGCAcAGCuuCGCGGcc -5'
10705 5' -53.2 NC_002794.1 + 94454 0.67 0.985072
Target:  5'- cGG-AGGAGUCgGUGgCGAcggcaacggcGGCGgCGGa -3'
miRNA:   3'- -CCaUCUUCAGgCACaGCU----------UCGCgGCC- -5'
10705 5' -53.2 NC_002794.1 + 111106 0.67 0.983279
Target:  5'- cGGcGGGA--CCGUggccGUCGAcGGCGCCGGc -3'
miRNA:   3'- -CCaUCUUcaGGCA----CAGCU-UCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 120084 0.67 0.981328
Target:  5'- cGGUGGcGGcgacgaCCGUGcCGAGcGCGCCGc -3'
miRNA:   3'- -CCAUCuUCa-----GGCACaGCUU-CGCGGCc -5'
10705 5' -53.2 NC_002794.1 + 76778 0.67 0.981328
Target:  5'- cGUAGAAGUCCGaGcCGGgcgGGCGagCGGc -3'
miRNA:   3'- cCAUCUUCAGGCaCaGCU---UCGCg-GCC- -5'
10705 5' -53.2 NC_002794.1 + 148113 0.67 0.97692
Target:  5'- --aAGAagcgacGGUCgGUGUCG-GGCGCgGGg -3'
miRNA:   3'- ccaUCU------UCAGgCACAGCuUCGCGgCC- -5'
10705 5' -53.2 NC_002794.1 + 89950 0.67 0.97692
Target:  5'- --cGGGAG-CCGacGUCGAGGCGuUCGGa -3'
miRNA:   3'- ccaUCUUCaGGCa-CAGCUUCGC-GGCC- -5'
10705 5' -53.2 NC_002794.1 + 118254 0.67 0.97692
Target:  5'- gGGcUGGAGGUcggCCGgggCGGcGGCGCCGGc -3'
miRNA:   3'- -CC-AUCUUCA---GGCacaGCU-UCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 115589 0.68 0.97445
Target:  5'- cGUAGcGG-CUGcgGUCGAcccgcucgcccGGCGCCGGg -3'
miRNA:   3'- cCAUCuUCaGGCa-CAGCU-----------UCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 115510 0.68 0.97445
Target:  5'- aGGUuGAGGUCCGccUGUCGcAGGaCGCggaGGa -3'
miRNA:   3'- -CCAuCUUCAGGC--ACAGC-UUC-GCGg--CC- -5'
10705 5' -53.2 NC_002794.1 + 115177 0.68 0.97445
Target:  5'- uGGUAGAcggcccGGUgCCGgcgGUCGAgccggcguAGCGCCu- -3'
miRNA:   3'- -CCAUCU------UCA-GGCa--CAGCU--------UCGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.