miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 3' -56.5 NC_002794.1 + 101551 0.66 0.926133
Target:  5'- cGAACGCCGuuccgaacgCCGGCGGgagugcCGGC-Cg -3'
miRNA:   3'- -UUUGCGGCua-------GGCCGUCaa----GCCGuGa -5'
10706 3' -56.5 NC_002794.1 + 104743 0.66 0.926133
Target:  5'- gGAGCGCuCGAUCUcguGGUAGcggUCGGCcCg -3'
miRNA:   3'- -UUUGCG-GCUAGG---CCGUCa--AGCCGuGa -5'
10706 3' -56.5 NC_002794.1 + 65986 0.66 0.926133
Target:  5'- cAACGUCGAaCUgGGCGGUgauccCGGCACc -3'
miRNA:   3'- uUUGCGGCUaGG-CCGUCAa----GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 90082 0.66 0.926133
Target:  5'- ---gGCCGAUgUGGC---UCGGCACg -3'
miRNA:   3'- uuugCGGCUAgGCCGucaAGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 102037 0.66 0.926133
Target:  5'- --uCGCCGAgCCGGC-GUuccUCGcGCGCUu -3'
miRNA:   3'- uuuGCGGCUaGGCCGuCA---AGC-CGUGA- -5'
10706 3' -56.5 NC_002794.1 + 34745 0.66 0.926133
Target:  5'- aGAGCGCgCGAcggCgCGGUGGgacgCGGCACg -3'
miRNA:   3'- -UUUGCG-GCUa--G-GCCGUCaa--GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 133381 0.66 0.920718
Target:  5'- --uCGUCG-UCCGGCGGUcaugaUCGGCcCg -3'
miRNA:   3'- uuuGCGGCuAGGCCGUCA-----AGCCGuGa -5'
10706 3' -56.5 NC_002794.1 + 32010 0.66 0.920718
Target:  5'- cGACGCaGA-CCaGGCAGgggacgCGGCGCUg -3'
miRNA:   3'- uUUGCGgCUaGG-CCGUCaa----GCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 131254 0.66 0.915069
Target:  5'- cGGACGCCG--CCGGCAccaccgcCGGCACc -3'
miRNA:   3'- -UUUGCGGCuaGGCCGUcaa----GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 181227 0.66 0.915069
Target:  5'- cGACGa-GAUCCGGCGa--CGGCGCg -3'
miRNA:   3'- uUUGCggCUAGGCCGUcaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 106365 0.66 0.915069
Target:  5'- cGGGCGCCGGUUCGcGCGGag-GGCAg- -3'
miRNA:   3'- -UUUGCGGCUAGGC-CGUCaagCCGUga -5'
10706 3' -56.5 NC_002794.1 + 40399 0.66 0.915069
Target:  5'- --uCGCCGAUUCGGUcgcGGggUCGGCcgGCg -3'
miRNA:   3'- uuuGCGGCUAGGCCG---UCa-AGCCG--UGa -5'
10706 3' -56.5 NC_002794.1 + 138133 0.66 0.915069
Target:  5'- --uCGCCGGUCucgggCGGCGGUUucuugcgcagcCGGCAUUu -3'
miRNA:   3'- uuuGCGGCUAG-----GCCGUCAA-----------GCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 185171 0.66 0.915069
Target:  5'- --cCGCCGG-CgCGGCGcggUCGGCGCg -3'
miRNA:   3'- uuuGCGGCUaG-GCCGUca-AGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 191659 0.66 0.909188
Target:  5'- --cCGCCGGgggacggcgCCGGCAGcggCGGCGg- -3'
miRNA:   3'- uuuGCGGCUa--------GGCCGUCaa-GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 111317 0.66 0.909188
Target:  5'- gAGACGCCGggCCaGCGGcgCGGgcCGCa -3'
miRNA:   3'- -UUUGCGGCuaGGcCGUCaaGCC--GUGa -5'
10706 3' -56.5 NC_002794.1 + 57407 0.66 0.909188
Target:  5'- cGGCGCCcgcguggCCGGCGugcuggUCGGCACg -3'
miRNA:   3'- uUUGCGGcua----GGCCGUca----AGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 49768 0.66 0.908587
Target:  5'- -cGCGCUcGUCUccccggaGGCGGUUgGGCACg -3'
miRNA:   3'- uuUGCGGcUAGG-------CCGUCAAgCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 120069 0.66 0.903075
Target:  5'- cGGAgGCCGAcgCGGCGGUggCGGCGa- -3'
miRNA:   3'- -UUUgCGGCUagGCCGUCAa-GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 129208 0.66 0.903075
Target:  5'- cGAGCgGCCGA--CGGCGGUggauaGGCGCg -3'
miRNA:   3'- -UUUG-CGGCUagGCCGUCAag---CCGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.