miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 5' -60.8 NC_002794.1 + 195211 0.65 0.766751
Target:  5'- aGCcCCGCCAGCUGCGGcagcagcccgcGCGGc-- -3'
miRNA:   3'- -CGuGGCGGUCGGCGCCcua--------CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 114751 0.66 0.761279
Target:  5'- gGCGCCGCCcGCCGgCGccgguccucGGcgGCGaGGAGg -3'
miRNA:   3'- -CGUGGCGGuCGGC-GC---------CCuaCGC-CUUU- -5'
10706 5' -60.8 NC_002794.1 + 108379 0.66 0.761279
Target:  5'- -gGgCGCCGGa-GCGGGGaGCGGAGg -3'
miRNA:   3'- cgUgGCGGUCggCGCCCUaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 142030 0.66 0.761279
Target:  5'- uGCuuCGCCuGUCGCGGGAccguaccgGCGGu-- -3'
miRNA:   3'- -CGugGCGGuCGGCGCCCUa-------CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 192142 0.66 0.761279
Target:  5'- uGCuGCUGCCGG-CGCGGucGcgGCGGAGc -3'
miRNA:   3'- -CG-UGGCGGUCgGCGCC--CuaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 181159 0.66 0.752076
Target:  5'- aGCccguCCGCCGcGCCGaCGGcGAacgGCGGAc- -3'
miRNA:   3'- -CGu---GGCGGU-CGGC-GCC-CUa--CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 36914 0.66 0.752076
Target:  5'- cGCGgCGCCGGCCcCGcGAccGCGGAGGa -3'
miRNA:   3'- -CGUgGCGGUCGGcGCcCUa-CGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 55806 0.66 0.752076
Target:  5'- cGCAgCGCCGGgCGCGGGcgcGCGc--- -3'
miRNA:   3'- -CGUgGCGGUCgGCGCCCua-CGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 143702 0.66 0.752076
Target:  5'- cGCGuuGCCcaCCGCGGGccccgGCGGGc- -3'
miRNA:   3'- -CGUggCGGucGGCGCCCua---CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 103954 0.66 0.75115
Target:  5'- cCGCuCGCCAGCCGCcGGcgcuucaGAcUGCGGGc- -3'
miRNA:   3'- cGUG-GCGGUCGGCG-CC-------CU-ACGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 111389 0.66 0.75115
Target:  5'- uGCACCuccgGCCAGCgCuCGGGGUcgagaccguaggcGCGGAGc -3'
miRNA:   3'- -CGUGG----CGGUCG-GcGCCCUA-------------CGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 108602 0.66 0.742774
Target:  5'- gGCGCgGCCgaccuGGUCGCGGuGGUGUgucGGAAc -3'
miRNA:   3'- -CGUGgCGG-----UCGGCGCC-CUACG---CCUUu -5'
10706 5' -60.8 NC_002794.1 + 104428 0.66 0.742774
Target:  5'- -gGCCGCCGgcccggacgccGCCGCGGGcgGCccGAGc -3'
miRNA:   3'- cgUGGCGGU-----------CGGCGCCCuaCGc-CUUu -5'
10706 5' -60.8 NC_002794.1 + 191871 0.66 0.742774
Target:  5'- -gGCCGgCGGCggaGgGGGcgGCGGAGg -3'
miRNA:   3'- cgUGGCgGUCGg--CgCCCuaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 107032 0.66 0.742774
Target:  5'- gGCGCCGCUGGggacccCCGCGucGGAggcgGCGGGc- -3'
miRNA:   3'- -CGUGGCGGUC------GGCGC--CCUa---CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 69741 0.66 0.733383
Target:  5'- aGCGCCacgGCCGgcgacGCCGCGGGGaugGCGacGAAGa -3'
miRNA:   3'- -CGUGG---CGGU-----CGGCGCCCUa--CGC--CUUU- -5'
10706 5' -60.8 NC_002794.1 + 67562 0.66 0.733383
Target:  5'- cGCGCCGCaccaaAGCCGaCcGGucgGCGGAc- -3'
miRNA:   3'- -CGUGGCGg----UCGGC-GcCCua-CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 101273 0.66 0.733383
Target:  5'- cCGgCGCCGGUgGCGGcg-GCGGGGAg -3'
miRNA:   3'- cGUgGCGGUCGgCGCCcuaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 112855 0.66 0.730549
Target:  5'- cGCGCCGCagCAGCUGCugcagcgcgcccacGGGAUcgucGUGGAGc -3'
miRNA:   3'- -CGUGGCG--GUCGGCG--------------CCCUA----CGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 125738 0.66 0.723911
Target:  5'- gGCGgagGCgGGCCGCGGGAcgGCGGc-- -3'
miRNA:   3'- -CGUgg-CGgUCGGCGCCCUa-CGCCuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.