miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10707 3' -49.9 NC_002794.1 + 178552 0.66 0.99948
Target:  5'- -cGAUCGGGcaccACGucuucACGCCgGUCUCGGa -3'
miRNA:   3'- cuUUAGUUUc---UGC-----UGCGGgCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 24373 0.66 0.99948
Target:  5'- ---uUCAGAGACGGgGCcCCGaggaccgagagaUCUCGa -3'
miRNA:   3'- cuuuAGUUUCUGCUgCG-GGC------------AGAGCc -5'
10707 3' -49.9 NC_002794.1 + 49857 0.66 0.99948
Target:  5'- ----gCGucGGCGGCGCCCGcCaccCGGa -3'
miRNA:   3'- cuuuaGUuuCUGCUGCGGGCaGa--GCC- -5'
10707 3' -49.9 NC_002794.1 + 25938 0.66 0.99948
Target:  5'- ----aCGAcGACGACGUCCGUC-Ca- -3'
miRNA:   3'- cuuuaGUUuCUGCUGCGGGCAGaGcc -5'
10707 3' -49.9 NC_002794.1 + 57430 0.66 0.99948
Target:  5'- -uGGUCGGc-ACGGCGCCCGUCa--- -3'
miRNA:   3'- cuUUAGUUucUGCUGCGGGCAGagcc -5'
10707 3' -49.9 NC_002794.1 + 126688 0.66 0.99948
Target:  5'- cGAAUCGGGGAgggaggGGCGCCgCGgaCUCGGg -3'
miRNA:   3'- cUUUAGUUUCUg-----CUGCGG-GCa-GAGCC- -5'
10707 3' -49.9 NC_002794.1 + 121357 0.66 0.99948
Target:  5'- gGAAGuUCGucGACGGCGUCCGagC-CGGc -3'
miRNA:   3'- -CUUU-AGUuuCUGCUGCGGGCa-GaGCC- -5'
10707 3' -49.9 NC_002794.1 + 52892 0.66 0.999446
Target:  5'- uGggGUCGAAcGCGGCGCcgccgCCGUCgccgccgccgucgcUCGGc -3'
miRNA:   3'- -CuuUAGUUUcUGCUGCG-----GGCAG--------------AGCC- -5'
10707 3' -49.9 NC_002794.1 + 62637 0.66 0.999358
Target:  5'- --cGUCGGAcccCGuCGCCCGcCUCGGc -3'
miRNA:   3'- cuuUAGUUUcu-GCuGCGGGCaGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 84149 0.66 0.999213
Target:  5'- ----aCGAGcgcGACGGCGCCuCcUCUCGGc -3'
miRNA:   3'- cuuuaGUUU---CUGCUGCGG-GcAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 115325 0.66 0.999213
Target:  5'- -cGGUCGcc-GCGGCGUCCGggccgCUCGGc -3'
miRNA:   3'- cuUUAGUuucUGCUGCGGGCa----GAGCC- -5'
10707 3' -49.9 NC_002794.1 + 83874 0.66 0.99904
Target:  5'- -cGGUCGGcgcGACGGC-CCCGggCUCGGc -3'
miRNA:   3'- cuUUAGUUu--CUGCUGcGGGCa-GAGCC- -5'
10707 3' -49.9 NC_002794.1 + 141937 0.66 0.99904
Target:  5'- cGGAUCcGAcGGCGGCGaCCCGUUggaCGGc -3'
miRNA:   3'- cUUUAGuUU-CUGCUGC-GGGCAGa--GCC- -5'
10707 3' -49.9 NC_002794.1 + 101845 0.66 0.999021
Target:  5'- gGGAGUgCGAGGACGAgacgcgcCGCCUGcugCUCGa -3'
miRNA:   3'- -CUUUA-GUUUCUGCU-------GCGGGCa--GAGCc -5'
10707 3' -49.9 NC_002794.1 + 118259 0.66 0.998836
Target:  5'- gGAGGUCGgccGGGGCGGCGgCgCCGgcgUCGGg -3'
miRNA:   3'- -CUUUAGU---UUCUGCUGC-G-GGCag-AGCC- -5'
10707 3' -49.9 NC_002794.1 + 53219 0.66 0.998836
Target:  5'- --cGUCGAGcGGCGAaacgGUCCGUcCUCGGc -3'
miRNA:   3'- cuuUAGUUU-CUGCUg---CGGGCA-GAGCC- -5'
10707 3' -49.9 NC_002794.1 + 62538 0.67 0.998596
Target:  5'- ----aCGAAGAgccCGACGCCCaUC-CGGa -3'
miRNA:   3'- cuuuaGUUUCU---GCUGCGGGcAGaGCC- -5'
10707 3' -49.9 NC_002794.1 + 157044 0.67 0.998596
Target:  5'- ---uUCAGAGucCGGCGagaCCGUCgCGGa -3'
miRNA:   3'- cuuuAGUUUCu-GCUGCg--GGCAGaGCC- -5'
10707 3' -49.9 NC_002794.1 + 89926 0.67 0.998596
Target:  5'- ----cUAGAGGCGcggGCGCCgGcuUCUCGGg -3'
miRNA:   3'- cuuuaGUUUCUGC---UGCGGgC--AGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 10290 0.67 0.998596
Target:  5'- --cGUCucAGACGAC-CCCGUCggCGa -3'
miRNA:   3'- cuuUAGuuUCUGCUGcGGGCAGa-GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.