miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10707 5' -58.3 NC_002794.1 + 147858 0.66 0.898605
Target:  5'- aUCCUGGGCGuCGucGCGcAGUcCUCGGCg-- -3'
miRNA:   3'- -AGGGCCUGC-GC--CGC-UCA-GAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 70305 0.66 0.892301
Target:  5'- gCCCGGGCGCGaaGAG-C-CG-CUUCg -3'
miRNA:   3'- aGGGCCUGCGCcgCUCaGaGCuGAAG- -5'
10707 5' -58.3 NC_002794.1 + 138677 0.66 0.892301
Target:  5'- gUCUGcGugGCGGCGGGUCgUGAUg-- -3'
miRNA:   3'- aGGGC-CugCGCCGCUCAGaGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 61894 0.66 0.892301
Target:  5'- gCgCGGcgaGCGCGGCGAG-CgcagCGACgUCg -3'
miRNA:   3'- aGgGCC---UGCGCCGCUCaGa---GCUGaAG- -5'
10707 5' -58.3 NC_002794.1 + 4445 0.66 0.892301
Target:  5'- cUUCCGGccgauACGCGGCGAuugaucaaUCUCGAUUg- -3'
miRNA:   3'- -AGGGCC-----UGCGCCGCUc-------AGAGCUGAag -5'
10707 5' -58.3 NC_002794.1 + 50732 0.66 0.892301
Target:  5'- gCCCGGG-GCGGCc-GcCUCGACUcgcUCg -3'
miRNA:   3'- aGGGCCUgCGCCGcuCaGAGCUGA---AG- -5'
10707 5' -58.3 NC_002794.1 + 66840 0.66 0.892301
Target:  5'- cUCCGGgcgccgccgucgGCGCGGCGAGgccgCGGCg-- -3'
miRNA:   3'- aGGGCC------------UGCGCCGCUCaga-GCUGaag -5'
10707 5' -58.3 NC_002794.1 + 53204 0.66 0.891659
Target:  5'- aCCCGGACucgucgucgucgaGCGGCGAaacgguccGUCcUCGGCc-- -3'
miRNA:   3'- aGGGCCUG-------------CGCCGCU--------CAG-AGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 81179 0.66 0.885786
Target:  5'- aCCCGGACaGCGGCu-GUCUCu----- -3'
miRNA:   3'- aGGGCCUG-CGCCGcuCAGAGcugaag -5'
10707 5' -58.3 NC_002794.1 + 22861 0.66 0.879065
Target:  5'- aUCCCGGACGUcccGGCc-GUCgCGcGCUUCc -3'
miRNA:   3'- -AGGGCCUGCG---CCGcuCAGaGC-UGAAG- -5'
10707 5' -58.3 NC_002794.1 + 15038 0.66 0.879065
Target:  5'- uUCCUGGugcuguucauCGCGGUcaucGGUCUCGGCcUCu -3'
miRNA:   3'- -AGGGCCu---------GCGCCGc---UCAGAGCUGaAG- -5'
10707 5' -58.3 NC_002794.1 + 123766 0.66 0.879065
Target:  5'- uUCCCGGGCGUGGaCGccUC-CGugUUg -3'
miRNA:   3'- -AGGGCCUGCGCC-GCucAGaGCugAAg -5'
10707 5' -58.3 NC_002794.1 + 96424 0.66 0.879065
Target:  5'- aUCUCGG-CGCGGCG---CUCGAUcUCa -3'
miRNA:   3'- -AGGGCCuGCGCCGCucaGAGCUGaAG- -5'
10707 5' -58.3 NC_002794.1 + 136884 0.66 0.879065
Target:  5'- aUCUGGACGUGGagcaGGGaUUCGAgUUCg -3'
miRNA:   3'- aGGGCCUGCGCCg---CUCaGAGCUgAAG- -5'
10707 5' -58.3 NC_002794.1 + 145611 0.66 0.879065
Target:  5'- -gUCGGGCGCGaCGAGgagCUCGGCc-- -3'
miRNA:   3'- agGGCCUGCGCcGCUCa--GAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 195124 0.66 0.872141
Target:  5'- gCCCGcGGCGCGcGCGGG-CUCG-Cg-- -3'
miRNA:   3'- aGGGC-CUGCGC-CGCUCaGAGCuGaag -5'
10707 5' -58.3 NC_002794.1 + 53846 0.66 0.872141
Target:  5'- --aCGGGCGUcucGGCGGGguUCUCGACg-- -3'
miRNA:   3'- aggGCCUGCG---CCGCUC--AGAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 185173 0.66 0.871438
Target:  5'- -gCCGG-CGCGGCGcGGUCggcgcggUCGGCgcggUCa -3'
miRNA:   3'- agGGCCuGCGCCGC-UCAG-------AGCUGa---AG- -5'
10707 5' -58.3 NC_002794.1 + 153086 0.66 0.871438
Target:  5'- gCUCGccagacuGACGCGccGCcuacgGGGUCUCGACUUCg -3'
miRNA:   3'- aGGGC-------CUGCGC--CG-----CUCAGAGCUGAAG- -5'
10707 5' -58.3 NC_002794.1 + 116378 0.66 0.865019
Target:  5'- -gUCGGugGCGuGCGGGUCgaaGACg-- -3'
miRNA:   3'- agGGCCugCGC-CGCUCAGag-CUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.