miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 34057 0.66 0.841548
Target:  5'- gGCCcGCGCacgaCCCG-CCGUUcccgCCGGCGGc -3'
miRNA:   3'- -UGGuCGUG----GGGCuGGUAGa---GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 186853 0.66 0.841548
Target:  5'- cGCgGGCGCUgCCGugCAgCagCAGCGGg -3'
miRNA:   3'- -UGgUCGUGG-GGCugGUaGagGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 144967 0.66 0.841548
Target:  5'- cUCGGCGCCUCGACgguGUCgcgaCCGGCGc -3'
miRNA:   3'- uGGUCGUGGGGCUGg--UAGa---GGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 53195 0.66 0.841548
Target:  5'- aGCCgAGcCACCCgGACuCGUCgucgUCgAGCGGc -3'
miRNA:   3'- -UGG-UC-GUGGGgCUG-GUAG----AGgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 78358 0.66 0.841548
Target:  5'- gGCCAGCAgcuCCaacaCGGCCugcUCcgCCAGCGa -3'
miRNA:   3'- -UGGUCGU---GGg---GCUGGu--AGa-GGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 185554 0.66 0.841548
Target:  5'- gGCCGcGCGCCCCGcCCug--CC-GCGGc -3'
miRNA:   3'- -UGGU-CGUGGGGCuGGuagaGGuCGCC- -5'
10708 3' -59.6 NC_002794.1 + 114497 0.66 0.841548
Target:  5'- uCCAcGCGCgCCgGACCGUCccggagcgagUCgAGCGGc -3'
miRNA:   3'- uGGU-CGUG-GGgCUGGUAG----------AGgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 116360 0.66 0.841548
Target:  5'- gGCCGcGCGgUCCGACCGgUCgguggCguGCGGg -3'
miRNA:   3'- -UGGU-CGUgGGGCUGGU-AGa----GguCGCC- -5'
10708 3' -59.6 NC_002794.1 + 152265 0.66 0.836855
Target:  5'- -aCAGUACgCCguccaGACCGUCUucgacuaccggaaccCCGGCGGg -3'
miRNA:   3'- ugGUCGUGgGG-----CUGGUAGA---------------GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 23634 0.66 0.836855
Target:  5'- cGCgCGGC-CCUCGACCccCUCCgccccccgagcgaccGGCGGa -3'
miRNA:   3'- -UG-GUCGuGGGGCUGGuaGAGG---------------UCGCC- -5'
10708 3' -59.6 NC_002794.1 + 70476 0.66 0.836855
Target:  5'- aGCCAGCACCCgaugucggggcagggCGACCGaCaggagccggUCCAGCc- -3'
miRNA:   3'- -UGGUCGUGGG---------------GCUGGUaG---------AGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 137607 0.66 0.836855
Target:  5'- cGCCGGCggucgcggcggcgguGCCCaCGACgaCGUC-CUGGCGGg -3'
miRNA:   3'- -UGGUCG---------------UGGG-GCUG--GUAGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 181920 0.66 0.833692
Target:  5'- cACCcGCGCgaCGGCCGUCUCC--CGGg -3'
miRNA:   3'- -UGGuCGUGggGCUGGUAGAGGucGCC- -5'
10708 3' -59.6 NC_002794.1 + 116311 0.66 0.833692
Target:  5'- aGCCcgagAGCACCgCGAUCAccUCgUCCAGCu- -3'
miRNA:   3'- -UGG----UCGUGGgGCUGGU--AG-AGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 71963 0.66 0.833692
Target:  5'- uACCGGCGCaUCaGCCgGUC-CCGGCGGa -3'
miRNA:   3'- -UGGUCGUGgGGcUGG-UAGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 107515 0.66 0.833692
Target:  5'- uGCCGGUcgacGCCgaCGGCCGgcgCggcgCCGGCGGc -3'
miRNA:   3'- -UGGUCG----UGGg-GCUGGUa--Ga---GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 68379 0.66 0.833692
Target:  5'- cGCC-GCcCCCCGACCugCUCC-GCGa -3'
miRNA:   3'- -UGGuCGuGGGGCUGGuaGAGGuCGCc -5'
10708 3' -59.6 NC_002794.1 + 11859 0.66 0.833692
Target:  5'- cGCCGGCGacgaccgcccgcCCCgCGACgGgucCUCgAGCGGg -3'
miRNA:   3'- -UGGUCGU------------GGG-GCUGgUa--GAGgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 26639 0.66 0.833692
Target:  5'- uCCGcGCACCCggacggCGGCCggCUCguCGGCGGg -3'
miRNA:   3'- uGGU-CGUGGG------GCUGGuaGAG--GUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 114806 0.66 0.833692
Target:  5'- -gCAGguCCCgGAggcCCGcgcgcUCUCCGGCGGc -3'
miRNA:   3'- ugGUCguGGGgCU---GGU-----AGAGGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.