miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 182741 0.66 0.949132
Target:  5'- cGGCCccagaaagacGCGGUACAGGUAGCaGCc---- -3'
miRNA:   3'- -CCGG----------CGUCGUGUCUAUCGcCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 75374 0.66 0.949132
Target:  5'- cGCCGCGGC-CGGc-GGCGGCg---- -3'
miRNA:   3'- cCGGCGUCGuGUCuaUCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 153418 0.66 0.949132
Target:  5'- cGCCGC-GCGCGGAgccgAGCugGGCgUGGAc -3'
miRNA:   3'- cCGGCGuCGUGUCUa---UCG--CCG-ACUUc -5'
10708 5' -55.6 NC_002794.1 + 111136 0.66 0.949132
Target:  5'- cGGCCGguGCuccACGcGGUAGCGGgUcAGGc -3'
miRNA:   3'- -CCGGCguCG---UGU-CUAUCGCCgAcUUC- -5'
10708 5' -55.6 NC_002794.1 + 103578 0.66 0.949132
Target:  5'- uGGCCgacgaGCAGCggucggGCAGGcAGCGGCggcacgcgcucuUGGAGa -3'
miRNA:   3'- -CCGG-----CGUCG------UGUCUaUCGCCG------------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 91597 0.66 0.944825
Target:  5'- uGGCCGCuGGUGCGc---GCGGCcGAGGg -3'
miRNA:   3'- -CCGGCG-UCGUGUcuauCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 115974 0.66 0.944825
Target:  5'- gGGgaGCGGgACGGggAGCGGCgccgcGGAGa -3'
miRNA:   3'- -CCggCGUCgUGUCuaUCGCCGa----CUUC- -5'
10708 5' -55.6 NC_002794.1 + 94281 0.66 0.944825
Target:  5'- cGG-CGCGGCccgaGCGGggGGCGGCUcGGGc -3'
miRNA:   3'- -CCgGCGUCG----UGUCuaUCGCCGAcUUC- -5'
10708 5' -55.6 NC_002794.1 + 33482 0.66 0.944825
Target:  5'- cGCUGCAGCugggcaacauGCAGA-AGCuGCUGGAc -3'
miRNA:   3'- cCGGCGUCG----------UGUCUaUCGcCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 150801 0.66 0.944825
Target:  5'- aGGCCccGCGGCggACGGccgAGCcGCUGGAGc -3'
miRNA:   3'- -CCGG--CGUCG--UGUCua-UCGcCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 58543 0.66 0.944825
Target:  5'- cGCCGCGGCGCGcgcgcuGcUGGCGcGCUGc-- -3'
miRNA:   3'- cCGGCGUCGUGU------CuAUCGC-CGACuuc -5'
10708 5' -55.6 NC_002794.1 + 89714 0.66 0.944825
Target:  5'- cGCCGCGGUGCcGAUccgcGCGGCgucgguccuUGggGa -3'
miRNA:   3'- cCGGCGUCGUGuCUAu---CGCCG---------ACuuC- -5'
10708 5' -55.6 NC_002794.1 + 186312 0.66 0.942129
Target:  5'- cGCCGCGGCGCGcucguccuccaacacGAUcgacGGCGGCg---- -3'
miRNA:   3'- cCGGCGUCGUGU---------------CUA----UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 186389 0.66 0.940286
Target:  5'- cGCCGCAGcCGCAGcc-GCGGCc---- -3'
miRNA:   3'- cCGGCGUC-GUGUCuauCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 184984 0.66 0.940286
Target:  5'- aGCaCGCAGCGCGcGA-AGCGGCg---- -3'
miRNA:   3'- cCG-GCGUCGUGU-CUaUCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 60512 0.66 0.940286
Target:  5'- cGUCGaCGGCACGGAggGGCuGgUGGAGa -3'
miRNA:   3'- cCGGC-GUCGUGUCUa-UCGcCgACUUC- -5'
10708 5' -55.6 NC_002794.1 + 48564 0.66 0.940286
Target:  5'- cGGCCGCccGUcCAGAUgGGCGaGCcGGAGg -3'
miRNA:   3'- -CCGGCGu-CGuGUCUA-UCGC-CGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 63451 0.66 0.935513
Target:  5'- cGGCCGCGGCGgCGacGAUgacgacgaGGCGGCg---- -3'
miRNA:   3'- -CCGGCGUCGU-GU--CUA--------UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 49061 0.66 0.935513
Target:  5'- gGGCgCGCAGCACGacucGCGGUaccaGAAGa -3'
miRNA:   3'- -CCG-GCGUCGUGUcuauCGCCGa---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 108330 0.66 0.935513
Target:  5'- uGGaCgGCGGCGCAGGaggaGGUGGC-GGAGc -3'
miRNA:   3'- -CC-GgCGUCGUGUCUa---UCGCCGaCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.