miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10709 5' -60.8 NC_002794.1 + 12706 0.66 0.799458
Target:  5'- gUCGGCCGugGgCUgcgCGUUCCgcggcgacGAGGg -3'
miRNA:   3'- -AGUCGGCugCgGGa--GCGAGGac------CUCC- -5'
10709 5' -60.8 NC_002794.1 + 138211 0.66 0.799458
Target:  5'- aCGGCUucCGuCCCgcggCGCagCUGGAGGa -3'
miRNA:   3'- aGUCGGcuGC-GGGa---GCGagGACCUCC- -5'
10709 5' -60.8 NC_002794.1 + 44015 0.66 0.790908
Target:  5'- gCGGCCGGCGUCCgcagaccgUCGCUCUccgcccccGGGGu -3'
miRNA:   3'- aGUCGGCUGCGGG--------AGCGAGGa-------CCUCc -5'
10709 5' -60.8 NC_002794.1 + 182915 0.66 0.782231
Target:  5'- gUAGUCGAUGUCgUCGCU-CUGGAa- -3'
miRNA:   3'- aGUCGGCUGCGGgAGCGAgGACCUcc -5'
10709 5' -60.8 NC_002794.1 + 187766 0.66 0.773433
Target:  5'- --cGCCGGCGCCggucgcCUCGaC-CCcGGAGGa -3'
miRNA:   3'- aguCGGCUGCGG------GAGC-GaGGaCCUCC- -5'
10709 5' -60.8 NC_002794.1 + 70681 0.66 0.773433
Target:  5'- gCGGCggUGACGUCCugUCGC-CgCUGGGGGu -3'
miRNA:   3'- aGUCG--GCUGCGGG--AGCGaG-GACCUCC- -5'
10709 5' -60.8 NC_002794.1 + 98356 0.66 0.764522
Target:  5'- cCGGCCGAuCGCCg-CGCggCUGGcGGGa -3'
miRNA:   3'- aGUCGGCU-GCGGgaGCGagGACC-UCC- -5'
10709 5' -60.8 NC_002794.1 + 183618 0.66 0.764522
Target:  5'- gCGGCCGGCGCCCcCGCgcccccgacUCgaGcAGGg -3'
miRNA:   3'- aGUCGGCUGCGGGaGCG---------AGgaCcUCC- -5'
10709 5' -60.8 NC_002794.1 + 181547 0.66 0.764522
Target:  5'- -gGGCCGGCGCUCUCGgUCgCcGGGc- -3'
miRNA:   3'- agUCGGCUGCGGGAGCgAG-GaCCUcc -5'
10709 5' -60.8 NC_002794.1 + 114746 0.66 0.755506
Target:  5'- -gAGCCGGCGCCgCcCGCcggcgccggUCCUcggcggcgaGGAGGa -3'
miRNA:   3'- agUCGGCUGCGG-GaGCG---------AGGA---------CCUCC- -5'
10709 5' -60.8 NC_002794.1 + 57621 0.66 0.755506
Target:  5'- gCGGCCGACGaCCUgGCcgacccgcaguUCCUgcgcccGGAGGc -3'
miRNA:   3'- aGUCGGCUGCgGGAgCG-----------AGGA------CCUCC- -5'
10709 5' -60.8 NC_002794.1 + 58358 0.67 0.746392
Target:  5'- cUCGGCCuGGCGCCgCcCGacuUCCaGGAGGc -3'
miRNA:   3'- -AGUCGG-CUGCGG-GaGCg--AGGaCCUCC- -5'
10709 5' -60.8 NC_002794.1 + 115599 0.67 0.746392
Target:  5'- gCGGUCGAC-CCgCUCGC-CCggcgccgGGAGGc -3'
miRNA:   3'- aGUCGGCUGcGG-GAGCGaGGa------CCUCC- -5'
10709 5' -60.8 NC_002794.1 + 150873 0.67 0.712896
Target:  5'- aUAGCCGGCGCagcgaccugcucuaCaUCGuCUCCgaGGAGGg -3'
miRNA:   3'- aGUCGGCUGCGg-------------G-AGC-GAGGa-CCUCC- -5'
10709 5' -60.8 NC_002794.1 + 101701 0.67 0.699635
Target:  5'- -gAGCCGGCGCCCgaggacgUGUUCgUGGugcacguGGg -3'
miRNA:   3'- agUCGGCUGCGGGa------GCGAGgACCu------CC- -5'
10709 5' -60.8 NC_002794.1 + 41934 0.67 0.699635
Target:  5'- cCAGCCcgaagugcACGCCCUCGgCgugcgcggCCUGGaAGGu -3'
miRNA:   3'- aGUCGGc-------UGCGGGAGC-Ga-------GGACC-UCC- -5'
10709 5' -60.8 NC_002794.1 + 100327 0.67 0.699635
Target:  5'- gCGGCCGGCGCacggCCg-GCUCucgaccgccgagCUGGAGGu -3'
miRNA:   3'- aGUCGGCUGCG----GGagCGAG------------GACCUCC- -5'
10709 5' -60.8 NC_002794.1 + 130277 0.67 0.699635
Target:  5'- gCGGuuGAgcCGCCgCUCGCUCCcGGGuccGGa -3'
miRNA:   3'- aGUCggCU--GCGG-GAGCGAGGaCCU---CC- -5'
10709 5' -60.8 NC_002794.1 + 185552 0.68 0.6901
Target:  5'- cCGGCCGcGCGCCC-CGC-CCUgccgcGGcAGGg -3'
miRNA:   3'- aGUCGGC-UGCGGGaGCGaGGA-----CC-UCC- -5'
10709 5' -60.8 NC_002794.1 + 107284 0.68 0.680522
Target:  5'- --cGCCGuCGCCCcgucgucgaCGCUCCUcgcGGGGGc -3'
miRNA:   3'- aguCGGCuGCGGGa--------GCGAGGA---CCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.