miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 3' -47.6 NC_002794.1 + 51272 0.66 0.99993
Target:  5'- cCGGGAGGcaGGCGCggcccGCcCGAACGGGCa -3'
miRNA:   3'- -GCUUUCUc-UCGCGa----UGuGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 125576 0.66 0.99993
Target:  5'- aGGAGGAGAGCGaca-GCGAGgAGuCg -3'
miRNA:   3'- gCUUUCUCUCGCgaugUGUUUgUCuG- -5'
10710 3' -47.6 NC_002794.1 + 122760 0.66 0.99988
Target:  5'- uCGAGcuGAucGAGCGCUcCGCGAGCGGcCu -3'
miRNA:   3'- -GCUUu-CU--CUCGCGAuGUGUUUGUCuG- -5'
10710 3' -47.6 NC_002794.1 + 125327 0.66 0.99988
Target:  5'- cCGAGccGGAGCGCgccacgGCGCAccGGCAGcCg -3'
miRNA:   3'- -GCUUucUCUCGCGa-----UGUGU--UUGUCuG- -5'
10710 3' -47.6 NC_002794.1 + 179619 0.66 0.99986
Target:  5'- gCGAgcGAcugccGGGCGCUGCGacggaaaggagaaguCAGGCGGGCu -3'
miRNA:   3'- -GCUuuCU-----CUCGCGAUGU---------------GUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 126696 0.67 0.9998
Target:  5'- gGAGGGAgGGGCGC--CGCGGACucgGGGCg -3'
miRNA:   3'- gCUUUCU-CUCGCGauGUGUUUG---UCUG- -5'
10710 3' -47.6 NC_002794.1 + 9897 0.67 0.9998
Target:  5'- cCGAuAGAGAGCcacGCUAUcgaGCAcAgGGACg -3'
miRNA:   3'- -GCUuUCUCUCG---CGAUG---UGUuUgUCUG- -5'
10710 3' -47.6 NC_002794.1 + 116039 0.67 0.9998
Target:  5'- cCGGAgaGGAGAGCGCagGgGgGAGCGcGACu -3'
miRNA:   3'- -GCUU--UCUCUCGCGa-UgUgUUUGU-CUG- -5'
10710 3' -47.6 NC_002794.1 + 149668 0.67 0.999744
Target:  5'- cCGAgcGGGGGCGCgucGCGCucGACuGGCc -3'
miRNA:   3'- -GCUuuCUCUCGCGa--UGUGu-UUGuCUG- -5'
10710 3' -47.6 NC_002794.1 + 104901 0.67 0.999675
Target:  5'- ----cGAGGcgccGUGCUGCuCGAGCAGGCg -3'
miRNA:   3'- gcuuuCUCU----CGCGAUGuGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 69368 0.67 0.999675
Target:  5'- gGAGAucGGGCGCgacgaaGCGAACAGAa -3'
miRNA:   3'- gCUUUcuCUCGCGaug---UGUUUGUCUg -5'
10710 3' -47.6 NC_002794.1 + 129893 0.67 0.999675
Target:  5'- gCGGGAGAGcgaacGGCGCUgggagcACGCGAuucgcCAGGCc -3'
miRNA:   3'- -GCUUUCUC-----UCGCGA------UGUGUUu----GUCUG- -5'
10710 3' -47.6 NC_002794.1 + 33110 0.67 0.999675
Target:  5'- uGAAcGuGAGCGgc-CGCGGGCAGACg -3'
miRNA:   3'- gCUUuCuCUCGCgauGUGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 22217 0.67 0.999652
Target:  5'- aCGAAcGAGGGacacacacaCGCUcgacacacggaggcACGCGAACGGGCg -3'
miRNA:   3'- -GCUUuCUCUC---------GCGA--------------UGUGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 43067 0.67 0.999591
Target:  5'- cCGAAAcAGGGCGUUcuCGCAgcuguAGCGGACg -3'
miRNA:   3'- -GCUUUcUCUCGCGAu-GUGU-----UUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 116400 0.67 0.999591
Target:  5'- aCGAAGGuGuGGCGggGCGCGAGCaccaGGGCg -3'
miRNA:   3'- -GCUUUCuC-UCGCgaUGUGUUUG----UCUG- -5'
10710 3' -47.6 NC_002794.1 + 151769 0.67 0.999488
Target:  5'- uCGAGauGGAGAccgcGcCGCUGCACGc-CAGACg -3'
miRNA:   3'- -GCUU--UCUCU----C-GCGAUGUGUuuGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 107638 0.67 0.999488
Target:  5'- aCGAAGaGGAGCGCgaacguCGCGAGgAGAg -3'
miRNA:   3'- -GCUUUcUCUCGCGau----GUGUUUgUCUg -5'
10710 3' -47.6 NC_002794.1 + 136090 0.68 0.999363
Target:  5'- gCGggGGAGgcguagacgucGGCGUccUGCACcuGGCGGGCg -3'
miRNA:   3'- -GCuuUCUC-----------UCGCG--AUGUGu-UUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 106296 0.68 0.999349
Target:  5'- gCGAGAGAcgacgacgacgacGAGCGCgACGCGcgcGACGGGu -3'
miRNA:   3'- -GCUUUCU-------------CUCGCGaUGUGU---UUGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.