miRNA display CGI


Results 1 - 20 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 184473 0.66 0.731755
Target:  5'- cCGcGCGaACGGCGCGCggggCCccggacgcccggGCgGCGCg -3'
miRNA:   3'- -GC-CGC-UGCCGCGCGgaa-GG------------UGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 140911 0.66 0.731755
Target:  5'- uGGCGGgaccugcaGGCGCGCUg-CCugCGCa- -3'
miRNA:   3'- gCCGCUg-------CCGCGCGGaaGGugGCGcg -5'
10713 3' -62.7 NC_002794.1 + 90463 0.66 0.731755
Target:  5'- uCGGCGAggcCGcGCGCGgCggggCCGCCGUc- -3'
miRNA:   3'- -GCCGCU---GC-CGCGCgGaa--GGUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 105418 0.66 0.731755
Target:  5'- uCGGCcuccAgGGUG-GCCg-CCGCCGCGCc -3'
miRNA:   3'- -GCCGc---UgCCGCgCGGaaGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 31899 0.66 0.731755
Target:  5'- -aGCGGCGcGUcgcugaugaGCGCCgacaggacgUCCAgCCGCGCc -3'
miRNA:   3'- gcCGCUGC-CG---------CGCGGa--------AGGU-GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 67221 0.66 0.731755
Target:  5'- uCGGCGccggGCGGCuaaccGCGUCUcgauuCCGCGCa -3'
miRNA:   3'- -GCCGC----UGCCG-----CGCGGAaggu-GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 10769 0.66 0.731755
Target:  5'- aCGGCGGCGuggagcugcaGUGCGCCaUCgCGaacaccgagaacCUGCGCa -3'
miRNA:   3'- -GCCGCUGC----------CGCGCGGaAG-GU------------GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 136439 0.66 0.726257
Target:  5'- gCGGCGGCuGCGUccgcuguugggucagGUCggcgaggUUCGCCGCGUa -3'
miRNA:   3'- -GCCGCUGcCGCG---------------CGGa------AGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 66825 0.66 0.722577
Target:  5'- gGGCGccCGGCGCGacuCCgggcgCCGCCGuCGg -3'
miRNA:   3'- gCCGCu-GCCGCGC---GGaa---GGUGGC-GCg -5'
10713 3' -62.7 NC_002794.1 + 48581 0.66 0.722577
Target:  5'- gGGCGagccggaggaGCGGCGCGUCg-CCGuCgGCGUc -3'
miRNA:   3'- gCCGC----------UGCCGCGCGGaaGGU-GgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 81777 0.66 0.722577
Target:  5'- cCGGC-ACGGCcguccGCGagaUUUCCgcugccucaGCCGCGCg -3'
miRNA:   3'- -GCCGcUGCCG-----CGCg--GAAGG---------UGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 140499 0.66 0.722577
Target:  5'- gGGCGcUGuacCGCGaCUUCCACCGCugGCg -3'
miRNA:   3'- gCCGCuGCc--GCGCgGAAGGUGGCG--CG- -5'
10713 3' -62.7 NC_002794.1 + 108854 0.66 0.722577
Target:  5'- gGGUGuguUGGCGCGCgg-UCACCGgGUc -3'
miRNA:   3'- gCCGCu--GCCGCGCGgaaGGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 84976 0.66 0.721655
Target:  5'- uGGCccCGGcCGCGaaaccccacgagcCCgaCCGCCGCGCu -3'
miRNA:   3'- gCCGcuGCC-GCGC-------------GGaaGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 153439 0.66 0.721655
Target:  5'- gGGCGugGacgauCGaaccgaccgagauCGuCUUUCCGCCGCGCa -3'
miRNA:   3'- gCCGCugCc----GC-------------GC-GGAAGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 123709 0.66 0.71981
Target:  5'- gGGCG-UGaGCGCGUCguucuauccgcugccCCACCGgGCg -3'
miRNA:   3'- gCCGCuGC-CGCGCGGaa-------------GGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 153340 0.66 0.713331
Target:  5'- aCGGCGACGcGUGUugucaggacgcgGCC--CgGCUGCGCg -3'
miRNA:   3'- -GCCGCUGC-CGCG------------CGGaaGgUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 76838 0.66 0.713331
Target:  5'- cCGGCGAU-GCGCGCCggCC-UCGUcgGCc -3'
miRNA:   3'- -GCCGCUGcCGCGCGGaaGGuGGCG--CG- -5'
10713 3' -62.7 NC_002794.1 + 107784 0.66 0.713331
Target:  5'- cCGGCGACGaccgcguccGCGCGCauugcgaaCGCCuCGCg -3'
miRNA:   3'- -GCCGCUGC---------CGCGCGgaag----GUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 65146 0.66 0.713331
Target:  5'- uCGGCGACuGgGuCGCCgucccgUCCGUgGCGCc -3'
miRNA:   3'- -GCCGCUGcCgC-GCGGa-----AGGUGgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.