miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 5' -54.7 NC_002794.1 + 116719 0.65 0.971802
Target:  5'- cGAGCGucucgguGCCGAGcGUguuggcgACGCCGcCGAGg -3'
miRNA:   3'- -CUUGCuu-----CGGCUC-CA-------UGCGGC-GCUUg -5'
10713 5' -54.7 NC_002794.1 + 145572 0.66 0.969223
Target:  5'- cGGACGAGcGCCGAcGGaGCGgcggccggcucCCGCGGAg -3'
miRNA:   3'- -CUUGCUU-CGGCU-CCaUGC-----------GGCGCUUg -5'
10713 5' -54.7 NC_002794.1 + 131 0.66 0.969223
Target:  5'- cGAcCGGAGCCcGGGacCGCCGCagGGGCg -3'
miRNA:   3'- -CUuGCUUCGGcUCCauGCGGCG--CUUG- -5'
10713 5' -54.7 NC_002794.1 + 16158 0.66 0.969223
Target:  5'- --uCGGAGCCGgcaugaacggcGGGUGgcCGaCCGUGAACu -3'
miRNA:   3'- cuuGCUUCGGC-----------UCCAU--GC-GGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 104301 0.66 0.969223
Target:  5'- cGGGCcGGGUgcacuUGAGGUugGCCGCGcaguACg -3'
miRNA:   3'- -CUUGcUUCG-----GCUCCAugCGGCGCu---UG- -5'
10713 5' -54.7 NC_002794.1 + 148072 0.66 0.969223
Target:  5'- ---gGGAGCCGGGaGUG-GCCuCGAGCg -3'
miRNA:   3'- cuugCUUCGGCUC-CAUgCGGcGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 118136 0.66 0.969223
Target:  5'- cGGgGAAGUCGGGGUGCaCCGUcaugGGGCu -3'
miRNA:   3'- cUUgCUUCGGCUCCAUGcGGCG----CUUG- -5'
10713 5' -54.7 NC_002794.1 + 147214 0.66 0.966165
Target:  5'- cGGGcCGggGCCGGGGcguUGgCGCGAu- -3'
miRNA:   3'- -CUU-GCuuCGGCUCCau-GCgGCGCUug -5'
10713 5' -54.7 NC_002794.1 + 58011 0.66 0.966165
Target:  5'- --uCGccGCCGGGGccgcCGCCGgCGAACc -3'
miRNA:   3'- cuuGCuuCGGCUCCau--GCGGC-GCUUG- -5'
10713 5' -54.7 NC_002794.1 + 135614 0.66 0.966165
Target:  5'- aAGCGGaucGGUCGcAGGUugACGUCGgCGAACa -3'
miRNA:   3'- cUUGCU---UCGGC-UCCA--UGCGGC-GCUUG- -5'
10713 5' -54.7 NC_002794.1 + 89708 0.66 0.966165
Target:  5'- aAACGgcGCCGcGGUGCcgauCCGCGcGGCg -3'
miRNA:   3'- cUUGCuuCGGCuCCAUGc---GGCGC-UUG- -5'
10713 5' -54.7 NC_002794.1 + 80020 0.66 0.966165
Target:  5'- cGAgGAGGCCGGGGagaccacuCGCCgacagugccggcGCGAGCc -3'
miRNA:   3'- cUUgCUUCGGCUCCau------GCGG------------CGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 105064 0.66 0.966165
Target:  5'- uGGACGggGUCGccguccAGGUGCGCgaaacaGCGGu- -3'
miRNA:   3'- -CUUGCuuCGGC------UCCAUGCGg-----CGCUug -5'
10713 5' -54.7 NC_002794.1 + 88073 0.66 0.966165
Target:  5'- gGGGCGggGCCGcGGUuugaacgggGCGUgGUGAu- -3'
miRNA:   3'- -CUUGCuuCGGCuCCA---------UGCGgCGCUug -5'
10713 5' -54.7 NC_002794.1 + 82572 0.66 0.966165
Target:  5'- cGGCGAGGCCGA----CGCCGcCGAGa -3'
miRNA:   3'- cUUGCUUCGGCUccauGCGGC-GCUUg -5'
10713 5' -54.7 NC_002794.1 + 47357 0.66 0.966165
Target:  5'- cGGACGuucgcgcucAAGCCGAGGccgaGCC-CGAGCc -3'
miRNA:   3'- -CUUGC---------UUCGGCUCCaug-CGGcGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 54235 0.66 0.966165
Target:  5'- cGGAUGAagcGGCCGAgcgcgcGGUccacgGCGCCGCGu-- -3'
miRNA:   3'- -CUUGCU---UCGGCU------CCA-----UGCGGCGCuug -5'
10713 5' -54.7 NC_002794.1 + 61864 0.66 0.966165
Target:  5'- uGGACGAcgccgcgcGCCGucGUcgGCGCCGCGcGGCg -3'
miRNA:   3'- -CUUGCUu-------CGGCucCA--UGCGGCGC-UUG- -5'
10713 5' -54.7 NC_002794.1 + 14457 0.66 0.966165
Target:  5'- cGGGCGAccguGUCGAgcGGcGCGCCGCGcuCg -3'
miRNA:   3'- -CUUGCUu---CGGCU--CCaUGCGGCGCuuG- -5'
10713 5' -54.7 NC_002794.1 + 8535 0.66 0.964231
Target:  5'- -cACGAAGUCuGGGaGCagaccguccgcgccuGCCGCGAACu -3'
miRNA:   3'- cuUGCUUCGGcUCCaUG---------------CGGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.