miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10714 5' -60.7 NC_002794.1 + 94148 0.66 0.816666
Target:  5'- cCGCGgCGGCGcUGGACGGUGGGgGg- -3'
miRNA:   3'- -GCGCgGCUGCcGCUUGCCGCCUgUga -5'
10714 5' -60.7 NC_002794.1 + 103919 0.66 0.816666
Target:  5'- cCGCGCaacGCGGCGAGCaGcGCGcGugGCc -3'
miRNA:   3'- -GCGCGgc-UGCCGCUUG-C-CGC-CugUGa -5'
10714 5' -60.7 NC_002794.1 + 129850 0.66 0.816666
Target:  5'- aGCGgaaccuCCGuC-GCGAACGGgGGGCGCa -3'
miRNA:   3'- gCGC------GGCuGcCGCUUGCCgCCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 90993 0.66 0.816666
Target:  5'- cCGgGCCGA-GGCgGAGCGgGCcGACACc -3'
miRNA:   3'- -GCgCGGCUgCCG-CUUGC-CGcCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 91752 0.66 0.816666
Target:  5'- gGUGCCGGCgGGCGGcaccgcGCaGGaCGGGCuGCUg -3'
miRNA:   3'- gCGCGGCUG-CCGCU------UG-CC-GCCUG-UGA- -5'
10714 5' -60.7 NC_002794.1 + 10877 0.66 0.816666
Target:  5'- gCGUGaCCGACGaCGGGCGGgCGGAgguguuucgcCACg -3'
miRNA:   3'- -GCGC-GGCUGCcGCUUGCC-GCCU----------GUGa -5'
10714 5' -60.7 NC_002794.1 + 151575 0.66 0.816666
Target:  5'- aGCGCCccccGGCGGCGcGCGccgccgccGCGGGCccGCg -3'
miRNA:   3'- gCGCGG----CUGCCGCuUGC--------CGCCUG--UGa -5'
10714 5' -60.7 NC_002794.1 + 48933 0.66 0.816666
Target:  5'- aGCGCCaggcgcuCGGCGAccucuucgcagACGGCGagcaGACACc -3'
miRNA:   3'- gCGCGGcu-----GCCGCU-----------UGCCGC----CUGUGa -5'
10714 5' -60.7 NC_002794.1 + 146856 0.66 0.816666
Target:  5'- gCGCGUCGuucGCGuuCGggUGGgGGGCGCg -3'
miRNA:   3'- -GCGCGGC---UGCc-GCuuGCCgCCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 127079 0.66 0.808439
Target:  5'- aGCGCCcgccgGAcCGGCuggaGAGCGGCGGcuCGCc -3'
miRNA:   3'- gCGCGG-----CU-GCCG----CUUGCCGCCu-GUGa -5'
10714 5' -60.7 NC_002794.1 + 43192 0.66 0.808439
Target:  5'- gCGCGCCGACcgggaaGGUG-GCGuGCGGAUu-- -3'
miRNA:   3'- -GCGCGGCUG------CCGCuUGC-CGCCUGuga -5'
10714 5' -60.7 NC_002794.1 + 553 0.66 0.808439
Target:  5'- uGC-CCGGCcucGGC--GCGGCGGugGCa -3'
miRNA:   3'- gCGcGGCUG---CCGcuUGCCGCCugUGa -5'
10714 5' -60.7 NC_002794.1 + 86906 0.66 0.808439
Target:  5'- gGcCGCCGAccCGGUGAcgcccgUGGCGGGCAg- -3'
miRNA:   3'- gC-GCGGCU--GCCGCUu-----GCCGCCUGUga -5'
10714 5' -60.7 NC_002794.1 + 94397 0.66 0.808439
Target:  5'- uCGCGCguGCGGgGAccGCGGUgugGGGCGCg -3'
miRNA:   3'- -GCGCGgcUGCCgCU--UGCCG---CCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 116891 0.66 0.808439
Target:  5'- gGCGCCGGCGcCGucucCGGCGGcCGg- -3'
miRNA:   3'- gCGCGGCUGCcGCuu--GCCGCCuGUga -5'
10714 5' -60.7 NC_002794.1 + 17626 0.66 0.808439
Target:  5'- -cCGCCG-CGGCGAGCGaucccgccgccGCGGcCGCc -3'
miRNA:   3'- gcGCGGCuGCCGCUUGC-----------CGCCuGUGa -5'
10714 5' -60.7 NC_002794.1 + 23691 0.66 0.807608
Target:  5'- aCGCGCCGccgaggccccgaaGCGucccgaaccGCGcGCGGCGGGCcCg -3'
miRNA:   3'- -GCGCGGC-------------UGC---------CGCuUGCCGCCUGuGa -5'
10714 5' -60.7 NC_002794.1 + 102481 0.66 0.805943
Target:  5'- gCGUGCCGGcCGGCuuccacguccuguuGcAGCGGCuGGCGCg -3'
miRNA:   3'- -GCGCGGCU-GCCG--------------C-UUGCCGcCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 68952 0.66 0.805943
Target:  5'- gGCGCCGGCGccucucccuccuccGCGGGCcgcgacgccGGCGucGACGCUu -3'
miRNA:   3'- gCGCGGCUGC--------------CGCUUG---------CCGC--CUGUGA- -5'
10714 5' -60.7 NC_002794.1 + 113703 0.66 0.803433
Target:  5'- aGCGCCagguucuggcucaggGACGGCGu-CGGCGacuGCACc -3'
miRNA:   3'- gCGCGG---------------CUGCCGCuuGCCGCc--UGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.