Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1088 | 5' | -54.7 | NC_000929.1 | + | 14100 | 0.66 | 0.591776 |
Target: 5'- aCCGGCGCUGCauuugaugccacCGGUAacggcgguuaucuGGCaGAGGCCg -3' miRNA: 3'- -GGCCGUGACG------------GUCGU-------------CCGaUUUUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 30025 | 0.66 | 0.59291 |
Target: 5'- -gGaGCACUGCCGGUucugGGGCgugcGCCg -3' miRNA: 3'- ggC-CGUGACGGUCG----UCCGauuuUGGg -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 1950 | 0.66 | 0.615657 |
Target: 5'- aCUGGCAgcCcGCgAGCAuGGCUGGAGuauuCCCu -3' miRNA: 3'- -GGCCGU--GaCGgUCGU-CCGAUUUU----GGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 30119 | 0.66 | 0.625918 |
Target: 5'- gCCGGUACacGCUGGCAGcguGCUGAuggugugguuuacAGCCUg -3' miRNA: 3'- -GGCCGUGa-CGGUCGUC---CGAUU-------------UUGGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 11911 | 0.66 | 0.639606 |
Target: 5'- uCCGGCgauauccggguGCUGucCCAGCGGGUgcagucauuuuCCCa -3' miRNA: 3'- -GGCCG-----------UGAC--GGUCGUCCGauuuu------GGG- -5' |
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1088 | 5' | -54.7 | NC_000929.1 | + | 16538 | 0.66 | 0.638465 |
Target: 5'- aCGGCaacguACUGCCAGUacGGGUacAAAUCg -3' miRNA: 3'- gGCCG-----UGACGGUCG--UCCGauUUUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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