miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11175 3' -53.7 NC_002816.1 + 8670 0.66 0.940837
Target:  5'- ----cGCcgaCACCAcCCCGCCCUcuUGCa -3'
miRNA:   3'- uguuaCGua-GUGGUuGGGUGGGG--ACG- -5'
11175 3' -53.7 NC_002816.1 + 96709 0.66 0.935877
Target:  5'- aGCAcuUGCucAUCACCGugucaauacGCUCAUCUCUGCu -3'
miRNA:   3'- -UGUu-ACG--UAGUGGU---------UGGGUGGGGACG- -5'
11175 3' -53.7 NC_002816.1 + 39506 0.66 0.935877
Target:  5'- gGCAGuUGUuUUuCCGuACCCACCCUUGUc -3'
miRNA:   3'- -UGUU-ACGuAGuGGU-UGGGUGGGGACG- -5'
11175 3' -53.7 NC_002816.1 + 6448 0.66 0.935877
Target:  5'- gUAAUuCGUCAcacCCGACCaC-CCCCUGCc -3'
miRNA:   3'- uGUUAcGUAGU---GGUUGG-GuGGGGACG- -5'
11175 3' -53.7 NC_002816.1 + 24895 0.66 0.930659
Target:  5'- aACAGUGUGUCaACCAgugaaACCCACUUCg-- -3'
miRNA:   3'- -UGUUACGUAG-UGGU-----UGGGUGGGGacg -5'
11175 3' -53.7 NC_002816.1 + 85319 0.66 0.919451
Target:  5'- uGCAGUGCGaCGCCAucuccUCCACCUCg-- -3'
miRNA:   3'- -UGUUACGUaGUGGUu----GGGUGGGGacg -5'
11175 3' -53.7 NC_002816.1 + 109861 0.66 0.919451
Target:  5'- aACAGUGCAUa------CCACCCCUGg -3'
miRNA:   3'- -UGUUACGUAgugguugGGUGGGGACg -5'
11175 3' -53.7 NC_002816.1 + 70391 0.67 0.907215
Target:  5'- cGCGggGCAaaaUCGCCGACUCGCgCCCc-- -3'
miRNA:   3'- -UGUuaCGU---AGUGGUUGGGUG-GGGacg -5'
11175 3' -53.7 NC_002816.1 + 6956 0.67 0.907215
Target:  5'- gGCGAUGCugaCACCGACaaguaCACCUauguacagCUGCu -3'
miRNA:   3'- -UGUUACGua-GUGGUUGg----GUGGG--------GACG- -5'
11175 3' -53.7 NC_002816.1 + 109983 0.67 0.907215
Target:  5'- cACGGU-CGaCACCAACaCAUCCCUGUg -3'
miRNA:   3'- -UGUUAcGUaGUGGUUGgGUGGGGACG- -5'
11175 3' -53.7 NC_002816.1 + 36961 0.67 0.907215
Target:  5'- aACuuAUGCAUCACC--UCC-CCUCUGUa -3'
miRNA:   3'- -UGu-UACGUAGUGGuuGGGuGGGGACG- -5'
11175 3' -53.7 NC_002816.1 + 12635 0.67 0.900716
Target:  5'- cACAAUcGCcauuuguucgAUCGCgAGCCCGCCUCcGCc -3'
miRNA:   3'- -UGUUA-CG----------UAGUGgUUGGGUGGGGaCG- -5'
11175 3' -53.7 NC_002816.1 + 39944 0.67 0.900716
Target:  5'- gGCAAcaccuCAUCGCUAugcugucuACCCGCCaCCUGUa -3'
miRNA:   3'- -UGUUac---GUAGUGGU--------UGGGUGG-GGACG- -5'
11175 3' -53.7 NC_002816.1 + 77310 0.67 0.900052
Target:  5'- ----aGCGUcCGCCAcauccacACCCACUCCcGCa -3'
miRNA:   3'- uguuaCGUA-GUGGU-------UGGGUGGGGaCG- -5'
11175 3' -53.7 NC_002816.1 + 119706 0.67 0.893966
Target:  5'- aAUAAUGUccCGCC-GCCUACCCCaccGCa -3'
miRNA:   3'- -UGUUACGuaGUGGuUGGGUGGGGa--CG- -5'
11175 3' -53.7 NC_002816.1 + 106871 0.67 0.893966
Target:  5'- ----aGCAcCACCAACUCGCCaCUGUc -3'
miRNA:   3'- uguuaCGUaGUGGUUGGGUGGgGACG- -5'
11175 3' -53.7 NC_002816.1 + 99796 0.67 0.889094
Target:  5'- ---uUGCAuagcgccccacacguUCACCAACCC-CCCCauuuuuuUGCu -3'
miRNA:   3'- uguuACGU---------------AGUGGUUGGGuGGGG-------ACG- -5'
11175 3' -53.7 NC_002816.1 + 100634 0.67 0.886969
Target:  5'- gGCA--GCAUCGCCcACCUACCCg--- -3'
miRNA:   3'- -UGUuaCGUAGUGGuUGGGUGGGgacg -5'
11175 3' -53.7 NC_002816.1 + 6608 0.67 0.886969
Target:  5'- -aGAUcCGUCAUCGACCacgCACCCUUGUa -3'
miRNA:   3'- ugUUAcGUAGUGGUUGG---GUGGGGACG- -5'
11175 3' -53.7 NC_002816.1 + 32035 0.67 0.886969
Target:  5'- -aAAUGCGUCugUucauAGCCCACaacgguCCUUGCa -3'
miRNA:   3'- ugUUACGUAGugG----UUGGGUG------GGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.