Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11185 | 5' | -46.9 | NC_002816.1 | + | 75917 | 0.7 | 0.991163 |
Target: 5'- gACACGUUCcccuuugaguuugaACgGGUA--GAGGUGGCg -3' miRNA: 3'- gUGUGCAAG--------------UGgUCAUugUUUCACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 19610 | 0.71 | 0.98352 |
Target: 5'- uGCAC--UCGCCGGUGAU--AGUGGUc -3' miRNA: 3'- gUGUGcaAGUGGUCAUUGuuUCACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 16858 | 0.71 | 0.978813 |
Target: 5'- gGCACGgacgUGCCcGUAuuuuacaGCGGAGUGGCa -3' miRNA: 3'- gUGUGCaa--GUGGuCAU-------UGUUUCACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 55403 | 0.72 | 0.970769 |
Target: 5'- aACgACGUUCACCAGUuugu-GGUGGa -3' miRNA: 3'- gUG-UGCAAGUGGUCAuuguuUCACCg -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 14443 | 0.74 | 0.926842 |
Target: 5'- uGCGCGUUUgcaaACCGu--GCAGGGUGGCg -3' miRNA: 3'- gUGUGCAAG----UGGUcauUGUUUCACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 110518 | 0.76 | 0.863999 |
Target: 5'- gCGCugGguaucccgUCGCCGGUGuuGAAGUGGUg -3' miRNA: 3'- -GUGugCa-------AGUGGUCAUugUUUCACCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 83533 | 0.83 | 0.512137 |
Target: 5'- gACACGggCGCCAGUGuguGCGAAGggGGCa -3' miRNA: 3'- gUGUGCaaGUGGUCAU---UGUUUCa-CCG- -5' |
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11185 | 5' | -46.9 | NC_002816.1 | + | 83737 | 1.14 | 0.008859 |
Target: 5'- gCACACGUUCACCAGUAACAAAGUGGCg -3' miRNA: 3'- -GUGUGCAAGUGGUCAUUGUUUCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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