Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11283 | 3' | -53 | NC_003083.1 | + | 43302 | 0.69 | 0.844084 |
Target: 5'- cCAugAUUGUGCGCACGGUguUGuugauGCCAu -3' miRNA: 3'- -GUugUGGCACGCGUGUUAguAC-----CGGU- -5' |
|||||||
11283 | 3' | -53 | NC_003083.1 | + | 43264 | 0.69 | 0.835531 |
Target: 5'- ---uGCCGUGCGCACcAUCGcgacGCCAu -3' miRNA: 3'- guugUGGCACGCGUGuUAGUac--CGGU- -5' |
|||||||
11283 | 3' | -53 | NC_003083.1 | + | 41829 | 0.7 | 0.799374 |
Target: 5'- cCAugACgCGUGCGCACucugCGUGGUUu -3' miRNA: 3'- -GUugUG-GCACGCGUGuua-GUACCGGu -5' |
|||||||
11283 | 3' | -53 | NC_003083.1 | + | 41688 | 0.73 | 0.592008 |
Target: 5'- -cACGCagaGUGCGCACGcGUCAUGGUUAc -3' miRNA: 3'- guUGUGg--CACGCGUGU-UAGUACCGGU- -5' |
|||||||
11283 | 3' | -53 | NC_003083.1 | + | 30526 | 0.79 | 0.327161 |
Target: 5'- aCGACACCGccGCGCACA---AUGGCCAu -3' miRNA: 3'- -GUUGUGGCa-CGCGUGUuagUACCGGU- -5' |
|||||||
11283 | 3' | -53 | NC_003083.1 | + | 27951 | 0.72 | 0.698815 |
Target: 5'- -cGCGUCGUGCGCGCucAAUUcgGGCCGc -3' miRNA: 3'- guUGUGGCACGCGUG--UUAGuaCCGGU- -5' |
|||||||
11283 | 3' | -53 | NC_003083.1 | + | 24053 | 0.69 | 0.817823 |
Target: 5'- ---gACgGUGCGUugGCAAUCGgcuUGGCCAg -3' miRNA: 3'- guugUGgCACGCG--UGUUAGU---ACCGGU- -5' |
|||||||
11283 | 3' | -53 | NC_003083.1 | + | 9696 | 0.66 | 0.943758 |
Target: 5'- aCGAUAgCGUGUGCAUAAUgaaccCAUGcaGCCAa -3' miRNA: 3'- -GUUGUgGCACGCGUGUUA-----GUAC--CGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home